G11106


Basic Information

Item Value
gene id G11106
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16554856 ~ 16555302 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15013
cttgcacaaaggcggaggtagcggtcctgctgctgggttgttgccctcctacggcctcctccacgtctcctggtgtactggcctgtcccctggtagcacctccagcctctggacactacgctgacagacacagcaaaccttcttgccacagctcgcattgatgtgccatcctggatgagctgcactacctgagccacttgtgtgggttgtagagtccgtctcatgctaccacgagtgtgaaagcaccaccaacattcaaaactgaccaaaacatcagccagacagcataggttctgagaagtggtctgtggtccccacctgcagaaccactcctttattgagtgtgtcttgctaattgccaataatttccacctgttgtctattccatttgcacaacagcaggtgaaattgattgtcaatcagtgttgcttcctaagtggacagttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15013 True 447 lncRNA 0.42 1 16554856 16555302

Neighbor

gene id symbol gene type direction distance location
meioc NA coding upstream 129930 16410515 ~ 16424926 (+)
LOC103035750 kcnh6a,kcnh6,LOC108427397,LOC107674162,LOC107570755,LOC107583039,LOC107658465 coding upstream 287659 16185008 ~ 16267197 (+)
gfap gfap coding upstream 382476 16155230 ~ 16172380 (+)
map3k3 map3k3,LOC107674169,LOC107570753,LOC107658467 coding upstream 419482 16090023 ~ 16135374 (+)
limd2 limd2,LOC107721965,LOC107674139,LOC107658411 coding upstream 474162 16046254 ~ 16080694 (+)
LOC111194175 NA coding downstream 387002 16942304 ~ 16946439 (+)
LOC111194187 NA coding downstream 392958 16948260 ~ 16951992 (+)
LOC103039111 tiam1b,LOC108411134,LOC107705640,LOC108278361,LOC107670130,LOC107669892 coding downstream 1618774 18174076 ~ 18215882 (+)
LOC103031729 NA coding downstream 1685116 18240418 ~ 18263534 (+)
LOC103033316 NA coding downstream 1773336 18328638 ~ 18336309 (+)
G11099 NA non-coding upstream 64647 16489985 ~ 16490209 (+)
G11090 NA non-coding upstream 79482 16474408 ~ 16475374 (+)
G10932 NA non-coding upstream 166404 16352730 ~ 16388452 (+)
G10911 NA non-coding upstream 231333 16321953 ~ 16323523 (+)
G10916 NA non-coding upstream 235284 16318826 ~ 16319572 (+)
G11107 NA non-coding downstream 5818 16561120 ~ 16561381 (+)
LOC111194208 NA non-coding downstream 648260 17203562 ~ 17204983 (+)
G11228 NA non-coding downstream 896386 17451688 ~ 17452181 (+)
G11255 NA non-coding downstream 976659 17531961 ~ 17532271 (+)
G11266 NA non-coding downstream 1057794 17613096 ~ 17613324 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 254189 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 519572 16011694 ~ 16035284 (+)
G10879 NA other upstream 594478 15952846 ~ 15960378 (+)
G10838 NA other upstream 785613 15758762 ~ 15769243 (+)
G10825 syt5a,LOC108427381,LOC107658481 other upstream 899518 15650282 ~ 15655338 (+)
LOC111194200 NA other downstream 584123 17139425 ~ 17143348 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 2857505 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 4407747 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 4420902 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 4904548 21459850 ~ 21463649 (+)

Expression


Co-expression Network