G111968


Basic Information

Item Value
gene id G111968
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 18095557 ~ 18173420 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU151337
ttttttatactgatgCAAGAAGGAAAGAACAATATATTGATCACAATCAAGATCAATCAACAGTTATatcagagagacacagagtccGATatggagagaaacagaaaatcaAACCAAGAGcctcattatcatcatcaaccTGCATTAACTCATTGAACACAGTGCAGACTCTGGATTCTGGGAAAAACACTGGCGTGGAAGCAGAACAGGGCCATCGCTGTGGATATGAAGAGGAATTTTAAGCCTATAGCCAAAGTGCAGAGTGAATCTGAAGGTCAGGGGATCAGTCTTCAACTGGTTTCAGATTTTATATGGGGACAAAAGGAGAGGACTAAAGAAAGAATACAGATGTAAGACTGATGCCAGTACAGTATCTGTAGGCGGTCTTCCCAAGtatgtataaaaacatattttatatattacagaCATATTAAGTAGGCctgttacaataattacattttatggacaatgtattgtcccagaaatagtTCAATTCAAGGgacaggaccccacaggaccaccaaagagaagctattatttgggtggtgggtcaatctcggcactgcagtgacactggtgtGTTATTGAGAGtagatcagatgcagcagtgctgctggagtttttaaacactgttcactCACTGTTCACACTATTAGACAATCCTACCTAGCTGCTCTACCTTCTATATAAAgtaagtcagagacagaagctctgaatgtGTTGcttcacagtttgtgttggtcattctCTAGCACTTTATTagtgctcacaggatgctgccttcaGGATACTATCCACAGGACGTAGTTCTTAGCTGAATATTTCTGactggtgtttaaaaactccagcagcattgctgtgtctgatccgtaccagcataacacacactaaaagtcaccaccaccataccagtgtcactgcagtgctgagaataacaaCCCCCCATCCAAATAACAGcttctctgtggtggtctctctcctgtggggtcaagaccattaaagaacagggtgaaaggaggataagaGGTCTATTTTGAGGGTTGCAACCCTCAATATATAATTAGCTGGTTTACCTTTCCAATTTACATATCATCACAAACTAGCTGtgatgtatatgtgtatgggtgtgtgtgttactgcacCTTTGTAATAGGTGTAATGTACTGTATGCTGGCGGGTGGAAGCAGCACTCATTGCACagggctggtgtgtgtgtgtgtgtgtgtgtatgtttgctGGAGCAGTTTAAGCAGGCAGGTTCAGACAGTGCTGGGATCAGAGGGAGGACCAGGCTTGGTGTGGGGCTCCCATGCACTAATATATAGTATTCTGtatgaatagagagagagaaaaaaagagagagagagagagagagaTTTACTggggcagagctttcagaatgGCGTTGACCTCTTCAGCCACAGCAGTCAGAGCAAACTCGAACTGGTCctgaggagagagaaaacacataGCACAGGATTAATACACAACCAACAACCAGTACATGCATCACTGCACTACACTAGTCCCACAGCCTGTATAACTGAATTGCATTCTTG
>TU151338
ttttttatactgatgCAAGAAGGAAAGAACAATATATTGATCACAATCAAGATCAATCAACAGTTATatcagagagacacagagtccGATatggagagaaacagaaaatcaAACCAAGAGcctcattatcatcatcaaccTGCATTAACTCATTGAACACAGTGCAGACTCTGGATTCTGGGAAAAACACTGGCGTGGAAGCAGAACAGGGCCATCGCTGTGGATATGAAGAGGAATTTTAAGCCTATAGCCAAAGTGCAGAGTGAATCTGAAGGTCAGGGGATCAGTCTTCAACTGGTTTCAGATTTTATATGGGGACAAAAGGAGAGGACTAAAGAAAGAATACAGATGTAAGACTGATGCCAGTACAGTATCTGTAGGCGGTCTTCCCAAGtatgtataaaaacatattttatatattacagaCATATTAAGTAGGCctgttacaataattacattttatggacaatgtattgtcccagaaatagtTCAATTCAAGGgacaggaccccacaggaccaccaaagagaagctattatttgggtggtgggtcaatctcggcactgcagtgacactggtgtGTTATTGAGAGtagatcagatgcagcagtgctgctggagtttttaaacactgttcactCACTGTTCACACTATTAGACAATCCTACCTAGCTGCTCTACCTTCTATATAAAgtaagtcagagacagaagctctgaatgtGTTGcttcacagtttgtgttggtcattctCTAGCACTTTATTagtgctcacaggatgctgccttcaGGATACTATCCACAGGACGTAGTTCTTAGCTGAATATTTCTGactggtgtttaaaaactccagcagcattgctgtgtctgatccgtaccagcataacacacactaaaagtcaccaccaccataccagtgtcactgcagtgctgagaataacaaCCCCCCATCCAAATAACAGcttctctgtggtggtctctctcctgtggggtcaagaccattaaagaacagggtgaaaggaggataagaGGTCTATTTTGAGGGTTGCAACCCTCAATATATAATTAGCTGGTTTACCTTTCCAATTTACATATCATCACAAACTAGCTGtgatgtatatgtgtatgggtgtgtgtgttactgcacCTTTGTAATAGGTGTAATGTACTGTATGCTGGCGGGTGGAAGCAGCACTCATTGCACagggctggtgtgtgtgtgtgtgtgtgtgtatgtttgctGGAGCAGTTTAAGCAGGCAGGTTCAGACAGTGCTGGGATCAGAGGGAGGACCAGGCTTGGTGTGGGGCTCCCATGCACTAATATATAGTATTCTGtatgaatagagagagagaaaaaagagagagagagagagagc

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151337 True 1559 lncRNA 0.43 2 18171800 18173420
TU151338 False 1373 lncRNA 0.42 2 18095557 18173420

Neighbor

gene id symbol gene type direction distance location
LOC103039642 des,desmb,LOC108437828,LOC107660100,LOC107705613,LOC107566324,LOC107566784 coding downstream 3521 18079358 ~ 18092036 (-)
LOC103043861 LOC108437841,LOC107566327,LOC107705612,LOC107748546,LOC107566796,LOC107688845 coding downstream 95688 17991404 ~ 17999869 (-)
chpf chpf coding downstream 185076 17889249 ~ 17910481 (-)
LOC103040564 LOC108443440,LOC108273224 coding downstream 543218 17514809 ~ 17552339 (-)
tbc1d23 tbc1d23,LOC107574489,LOC107752629 coding downstream 597034 17471835 ~ 17498523 (-)
LOC103040268 LOC108437831,LOC108272774,LOC107596329,LOC107660144,LOC107705618 coding upstream 555 18173975 ~ 18183987 (-)
LOC103040586 LOC108437832 coding upstream 18258 18191678 ~ 18208990 (-)
LOC103041078 cacnb4b,LOC108437833,LOC108272385,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 coding upstream 58662 18232082 ~ 18282278 (-)
LOC103041993 inpp4ab,LOC108437834,LOC108273053,LOC107566790 coding upstream 115090 18288510 ~ 18354514 (-)
tgfbrap1 tgfbrap1,LOC107596311,LOC107738304,LOC107688833,LOC107748533,LOC107660108 coding upstream 978058 19151478 ~ 19184389 (-)
G111951 NA non-coding downstream 89593 18000400 ~ 18005964 (-)
G111870 NA non-coding downstream 148464 17945693 ~ 17947093 (-)
G111852 NA non-coding downstream 208748 17886404 ~ 17886809 (-)
G111839 NA non-coding downstream 231310 17863730 ~ 17864247 (-)
G111835 NA non-coding downstream 316163 17773009 ~ 17779394 (-)
G112014 NA non-coding upstream 211867 18385287 ~ 18386462 (-)
G112016 NA non-coding upstream 214409 18387829 ~ 18388041 (-)
G112022 NA non-coding upstream 223916 18397336 ~ 18571166 (-)
G112034 NA non-coding upstream 529855 18703275 ~ 18703577 (-)
G112047 NA non-coding upstream 711882 18885302 ~ 18885590 (-)
G111763 NA other downstream 571171 17523646 ~ 17524386 (-)
G111664 NA other downstream 1328252 16764687 ~ 16767305 (-)
G110969 NA other downstream 4234482 13860585 ~ 13861075 (-)
LOC103038496 gbg12,LOC103038496,LOC108271932,LOC105895117,LOC107705318,LOC107555383,LOC107564436,LOC108437694,LOC107678346 other downstream 5041685 12930798 ~ 13053872 (-)
LOC103045540 LOC108430857 other downstream 7117468 10949959 ~ 10978089 (-)
G112029 NA other upstream 458781 18632201 ~ 18632860 (-)
G112125 NA other upstream 1051182 19224602 ~ 19225084 (-)
LOC103029406 LOC556764,LOC108424762,LOC105913225 other upstream 1293133 19466553 ~ 19479907 (-)
LOC103026630 LOC103026630,LOC108424735,LOC105910165,LOC105910166,LOC107705921,LOC107568399,LOC107676721 other upstream 1414614 19588034 ~ 19636446 (-)
G112280 NA other upstream 1559184 19732604 ~ 19733373 (-)

Expression


Co-expression Network