G113022


Basic Information

Item Value
gene id G113022
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 22662581 ~ 22666345 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU152760
agagactAAAACTGGTAgaaatagagctggtgagatctctttatgtgagagttattgatagaataaaataatacattttatttgtgggCACCTTTCTTGACACTCCAGGTCACCTCACATAATTCAACATTAAACAgactagaatataaaatacacagtaaaataaaagtaccgAATAGTATTAATAATCACAAATCATAGGCAACTTTAAACAGATGATGTGGCAAAGAGGCTAAGAATTGTGAATTGTGTGCAAAGAAGTTAATAAACATGTTCtgtatagcccatagacctattctaaatagtgtaaaaagatgtatatgtcccctttaagtgatttaatctACTAAAAGTGTCTAATTCAGGAAAATAACTGacaatttatttagtatttagtctagaaataatgcttaaaacagGCAAATATATCTACCAATATAATAATAGACTTTTGGTCGATTAAATTGCTTAAAACTAAGAATTAAAAGttcaaaataagtttaaaatgaataaaaaaaatattgtgaacaGTACAAGAATTAGAAATTACAGATATTTAAACTAGATTTAAGAGGATTCCTCCTGCTAGGATTTTAGTCTGTGCAGTGTATACACTTAAgggacaacacacacacagttcggCTCATTAGGAAACATTAGAAGCACTGCATCACCATCATTaatgtagtgtggtgtgtgttatcACCAGGGCCGTGAGCACGAGTACACACCATTACCCACTAGTGCTGTTAATGTAGGCCTGCTGTCTGTCTGCACCGTTCACAACTCCAAAACACTTCCTGACTGAACTCTATGGAAGCTCATTTTAattgtcttttttatataaatcctGTTCTGTTTCTGACAGCAGTTTGTTAAATAGTAAGGaattattttcttaaaattatGACATTTTCAATAttcagtctgaaaaaaaaaaacatgttttgggGGGAATATATGCCAGTACTTAGCTAAATTTCatattatgtgaaataatattttttatttttaaattgaaaaaaaaaaattgaaatgtcaaaatcaaaagaaaacataattattttgagatagtcaAGTTATTTCAAAATACTAAATGAATATTTAGAGAATATgtgcaataaaatgaaatactAACTTATTGGGTTTGGGAAAATACGTATGTATTAGAAAAACATATAAGtcaaacatataatataaaatataaaatatataaaatatttattgaaaaaaatattgcttccagatattaattaaaataaaaatattatattattttaaataattttatattatttaaaaatattaaactaatatatatatatatattctttttttttaatatatataatttttaatatataaaatgtttagtttttttttgccaaaaataaaaagctgtattaaataaaactaatacatAGTGTTTGGGAAAAGATGTGATTACATAAAAAAGTGCAGAATTCATTTgagaacaaaactgtaaaaatgttattaCTTCAAgatactaatttaaatatttggggaaatatttccttatttataaaaaaaaaacgaaaaatgtGGATAAATGATTCCAATAtatagtttaaatatataaagtcaAAATTTaggaaattattttaaaataccaaagattttaaaataataaattaatatttggagaatatatgcaataaaaaatgaaaataaagcttaaataaagcttaaaaatattacttattatttattaaaaaaatatgtgcagAAAATCGAATCaaaattgaaaagaaaataaattattttaagatactttgtcaagtttttttttttaatatttaatgaatatttGAAAAGGAAACATCTGCACTAATTTGAAAATAGTTAAAAAGCGAAAATGAGGAATTCATTTGAGATCAAATATATGTTATTACTTCAAGATACTAATTAAAAGTTTTGGGGGACAAAAATACTGAAACTAATATTTggaaatagtttattaaaatgtttatttatttatttatttttcttaattgaAGCCCAATAAGTGATTATATTAAGATTAAGTTATTGGAAATGTTGAGAAAGTTCTTAATTTCAAgttattttaagaacatttttgaGAAGTTAAGCCAACAGTCTGAGAAAAGCCAATaagttttagttcattttaaccTACTGCTGCCAGTAAACTGAATAAGAGACATATAAAGGCACATATAGACTTCCATTGACTTCATGTTAATGACACATagtcaaatatataaaacatatatatataaccccGCCTccataaatgcattaaaacacactCCTCAatcacagcaacacacacaggGGGGCAGGAGATATTTTACTTTGTGAGCTAAGGAACAGCCTGGTCTTCAGGCTTTCACCTGTCATGTCAAAATCTGTTACCTGCCTGATTGTGTTCCTCCTCTCATTCTGCTGCTGTGTTCTGATTTTGTGTTTGAGCGAAGGGCAGAACTCTGACTACAGCTGACGCTAAAGCTAAcgctaaagctaaaaaaatcaATGCCTTATCCTCCATCCCGTCTTTCAAACTCGCTTCCAGAACCTGCTCCTCTGGGTTTCTGTGGGAAAGAGAATGTTCAGATGTTTCTAACGTTGGAAGTGACGGCAGGAAGTGCTGAAGACCTGCCTGAGCCATGGTAACATATTTTGGCAAGAcactttaaagttaaaaaatgtgTGTCTATGTCACGATTCCGAGTAACACTGGAACACCGGAGGTCCTCGTTACTGTATTTCAGTGCAATTTTGCTttttgtcaaaaataaaaaagatgtatcaaataaaaaaagacaagataaagataaaggGAGGAGTAGTTCGGAGAGTGGGGCCTTTCCCCTTCTTTAGCAACAACGGAGTAGGTGCGTTTCCACGGGAGagacgtgtgtgtatgtgattcTGTAGTCCTTAGTCTGGTGCTCCGTgacaaatgtgttaaaaaataaaaagaaaaaatgaaaagaaataaagtaaatccGTAAAAAGGTGAAACTGAATTTAACATTAAGTgaggtttaaaaaataaaaaaacattatcgattaaaaaaaataataactaggATTACAGTACTGCTGATAATCATCATGAGTCTGAGGTCTGATATCAAAGTGGGAGTTTATTTCGTTCGTCTGTTGGATCGTGTGTGGGGAGCCCATCGCTCCGGTTCTTTGGACACTGGATCTGTGTGTTGCTCCATTATTTTGTACAGTAActcaaacagataaaaaaaaaaatgagatgagggaaaacatttgtaaaatacTGTGTCTGTGACTCcttgtaaaatattttcaaattgtTTATTACAGAGAATcagttattaaataatgttCATATTTTTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152760 True 3359 lncRNA 0.29 2 22662581 22666345

Neighbor

gene id symbol gene type direction distance location
mst1 mst1,LOC107707265,LOC107666157,LOC107595414 coding downstream 16990 22611506 ~ 22645591 (-)
LOC103023031 gnb1,gnb1b,LOC105895937,LOC108272010,LOC107666091,LOC107595416,LOC103044197 coding downstream 102292 22516156 ~ 22560289 (-)
LOC103023872 rbm5,LOC108433690,LOC108271979,LOC107696464 coding downstream 190989 22455022 ~ 22471592 (-)
LOC111193663 LOC108433669 coding downstream 212182 22445889 ~ 22450399 (-)
LOC111193748 LOC108271854,LOC106566064,LOC107587570,LOC107723915,LOC107696468 coding downstream 295883 22242530 ~ 22366698 (-)
LOC103024805 cacna2d2,LOC108433686,LOC108271986 coding upstream 3811 22670156 ~ 23092965 (-)
LOC103041502 NA coding upstream 601210 23267555 ~ 23273813 (-)
LOC103039131 LOC108433682 coding upstream 615468 23281813 ~ 23288883 (-)
rps10 rps10,LOC107595410,LOC102793608 coding upstream 675367 23341712 ~ 23347990 (-)
spdef LOC108271967,LOC108433664,LOC107744410,LOC107724522,LOC107595455,LOC107587644,LOC107666045,LOC107696418 coding upstream 737921 23404266 ~ 23425716 (-)
G113008 NA non-coding downstream 78558 22579473 ~ 22584023 (-)
G112994 NA non-coding downstream 211469 22390203 ~ 22451112 (-)
G112988 NA non-coding downstream 278238 22346630 ~ 22384343 (-)
G112990 NA non-coding downstream 300622 22361218 ~ 22361959 (-)
G112977 NA non-coding downstream 317023 22342255 ~ 22345558 (-)
G113030 NA non-coding upstream 38054 22704399 ~ 22705663 (-)
G113036 NA non-coding upstream 94352 22760697 ~ 22762206 (-)
G113037 NA non-coding upstream 100696 22767041 ~ 22769078 (-)
G113038 NA non-coding upstream 102891 22769236 ~ 22769439 (-)
G113074 NA non-coding upstream 228519 22894864 ~ 22895681 (-)
LOC111193684 NA other downstream 57443 22594412 ~ 22605138 (-)
LOC111193749 NA other downstream 185253 22473702 ~ 22477328 (-)
LOC103026049 slc38a3b,slc38a3,LOC108411719,LOC107666102,LOC108271853,LOC107723914 other downstream 232197 22376312 ~ 22430384 (-)
G112778 LOC103032844,LOC108430042,LOC108246801,LOC105893128 other downstream 1009847 21601244 ~ 21652734 (-)
LOC103040822 LOC108429994 other downstream 1077102 21581745 ~ 21585479 (-)
LOC103039435 tusc2,LOC108433681,LOC103039435,LOC107696420,LOC107595412,LOC107724521 other upstream 632883 23299228 ~ 23312013 (-)
G113190 NA other upstream 886004 23552349 ~ 23553064 (-)
LOC103040267 LOC108433657 other upstream 892756 23559101 ~ 23563807 (-)
G113276 NA other upstream 1069609 23735954 ~ 23793461 (-)
G113304 NA other upstream 1234778 23901123 ~ 23901498 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G19674 NA non-coding CM030122.1 CM030122.1 53276881 ~ 53320938 (+)