LOC103029202 (LOC108440675,LOC108271813,LOC107711038,LOC107673578,LOC107667363)


Basic Information

Item Value
gene id LOC103029202
gene name LOC108440675,LOC108271813,LOC107711038,LOC107673578,LOC107667363
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36082114 ~ 36114040 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254277.3
agagagagagagagagagagagagagagagagagaagagagagagagagagactgcgcTCTCTGATCCTCCGGACTGGAAACCTAAACAGTGATCAGACGCAGCTTTCTTTCTCCGGTTTAGCAGCAGGTTAGGCTGTGGTGGCTCTGGCTCTCACCATGCCTGTCTCGTGTGGACTGATGCTTCACTGACAGAGACcttactacctacctacctccagTCGTCTCTCCACTCCTCCCTCCCCACGCTACATCTCATCATCTCCCATCTCCCGAAGCTGCATCCTGCCTGTGTCTGCTGGAGGGCTGCACGCAGCTGGAGGGAGAAACTACAATGTCTGCAGAAAACAGTGGTCAGGAGAGCATGCTGAGCTACCAGAGGCCAGATGAAGAAGTGGTAGTGGACCAGGGAGGCACGAGCTCAGTCTTAAACATCCACTATGAGAAAGAAGAGCTGGAGGGTCACAGGACGCTGTATGTTGGGGTGCGAATGCCTATGGGCAGGCCGTCCCATCGCCACAGGAGCTCCAAACatcgcaagagagagagagtaagagcaGGGAGTCTAGCACCAGAAGGAGAGAATACAGATGACACAACTACCACCTCACATGacacaccatcCCAGAGGGTGCAGTTTATTCTGGGCacagaggaggatgaggagcaTGTGGCTCATGACCTTTTCACCGAGCTGGATGAGATCTGTGTTAAAGATGGCAAAGATGCAGAGTGGAAGGAAACTGCCAGATGGTTGAAGTTTGAGGAGGATGTGGAGGATGGAGGAGAGAGGTGGAGTAAACCCTATGTAGCTACTCTCTCACTGCACAGTCTATTCGAGCTGCGCAGCTGCCTCATAAACGGGACTGTCCTGCTGGACATGAGAGCTGACAGCATTGAGGAGATTGCAGataTGGTGCTGGACCACCAGGAAGCAGCTCATGAGTTGGACGACAGTGTGAGAGTGAAGGTTCGAGAGGCTCTGTTAAAGAGGCATCATCACCAAAGTGATAAAAAGAGGTCTAATCTGCTCCCCATGGTCAAATCCCTCACAGAATCTGGCAGGAAACAGAGTGAACCGCAAATGGACAAGAGCGGGCCTGCTACGTCTCCACAGCCTCCTCCTGTAAGCGCTGATGTGAAAAACGGGACAGGGCAGGATAATGGTCAAGTGGACCTCAGTAagGTGGATACACACTTCATGAAGAAAATCCCAACTGGAGCAGAAGCTTCCAATGTACTGGTGGGAGAACTGGACTTCCTGGAAAGACCTATTGTGGCGTTTGTCCGCCTGTCTCCAGCTGTATTGCTGACCGGACTCACTGAAGTACCTATACCAACCAGgtttATGTTCATTCTGCTTGGGCCAGATGGAAAAGCTCAGCAGTATCATGAGATCGGCCGCTCCATGGCTACTATTATGACTGATGAGATATTTCATGATGTAGCGTATAAGGCAAAGAACAGGAGTGACCTACTGGCTGGTATTGATGAGTTTCTGGATCAAGTGACAGTTTTACCCCCTGGAGAGTGGGACCCCTCGATACGCATTGAGCCACCCAAGACTGTACCTTCACAGGAGAAGAGGAAGATGCCTGGAGTGCCAAATGGTACAGTTGTTCCAGTAGAGGAGGAACCACACGGGGAACACCATGGACCAGAACTTCAAAGAACTGGGAGGTTGTTTGGAGGTTTGATTCTGGATGTGAAGCGGAAAGCTCCGTTTTATCTGAGTGATTTTAAAGATGGAATAAATTTGCAGTGCGTGGCGTCTTTCCTTTTCCTCTACTGTGCGTGCATGTCTCCTGTCATCACATTTGGAGGACTCTTAGGAGAAGCTACAGAGGGACGCATTAGTGCTATTGAGTCTTTGTTTGGCGCCTCAATGACTGGTGTGGCGTACTCACTTTTTGCTGGACAGCCGCTCACTATTTTGGGCAGTACTGGACCGGTTCTAGTATTTGAGAAAATCCTTTTCAAGTTTTGCAAAGACTACGACCTGTCTTACCTGTCTCTACGCGCCTGTATCGGTCTTTGGACAGCCTTCCTGTGTTTCCTTCTAGTTGCTACAGACGCCAGTTCACTAGTCTGTTACATCACTCGCTTTACTGAGGAGGCCTTTGCTTCCCTCATCTGCCTCATCTTCATCTATGAGGCCTTGGAAAAACTTGTGCACCTGGGAGAACTCTACCCCATCAACAAACACAGTGACCTGGACAAACTCACTCTCACATACTGTAAGTGTGCAGAGCCTGACAACCCTGGTAATAAGACCCTGATGATGTGGAGTGAGAGAAACATCACAGCTTCAGGAGTGTCCTGGAGTAACCTCACTGTGAAGgagtGCTTAGATCTCCATGGGCACTTTGTTGGGACGGCCTGTGGGCACCATGGTCCGTACACACCTGATGTTCTCTTCTGGTCAGCTATCTTGTTCTTTTCGACATTCTTCCTGTCCACCTTCCTTAAACAGTTCAAGACCAGCAGATATTTTCCAACAAAGGTGCGGTCCATGATCAGTGATTTCGCCGTCTTCCTCACTATCGTTTTTATGGTCCTGATTGACTACGCCATCGGAGTTCCATCCCAAAAACTACAAGTGCCCAGCAAGTTTAAGCCTACACGTGACGACCGAGGATGGCTGATTAACCCAATTGGACGGAACCCATGGTGGACAGTGCTAGCAGCATCCGTTCCAGCTCTGCTCTGTACCATACTCATCTTCATGGACCAGCAGATCACTGCCGTCATCATCAACCGCAAAGAGCACAAACTGCTGaAAGGCTGTGGCTACCACTTAGACCTGCTGATGGTGGGGGTGATGCTGGCTGTGTGTTCTATAATGGGCTTGCCCTGGTTTGTGGCAGCGACTGTGCTGTCCATCTCACACGTGAACAGCCTAAAGTTGGAGTCAGAGAGCGCCGCCCCCGGAGAGCAGCCTCGCTTCCTGGGTATCAGAGAGCAAAGACTGACTGGCCTGGTCATCTTTCTGCTTATGGGCTGCTCTGTGTTTATGACCGGTGCTTTACAGTTCATCCCAATGCCAGTGTTGTATGGAGTCTTCCTTTATATGGGTGCCTCCTCTTTGAAAGGCATTCAGTTCTTTGACCGTCTAAAGTTGTTTGGAATGCCTGCAAAGCACCAGCCGGATTTTATCTACCTTCGTCATGTTCCTCTGAGGAAGGTCCACCTGTTCACCCTCACTCAGCTTACCTGCCTCGTCTTGCTGTGGGTCATTAAGACCTCCCCTGCTGCTATCGTATTCCCAATGATGGTGCTGGCATTAGTGTTTATTCGTAAGCTGCTGGATTTCTGTTTTACCAAACGGGAGCTCAGTTACCTCGACGACATCATGCCCGAGAGCAAAAAGAAGAAGCTAGATGATGCCTCCAAAACAGTAGAAGAGcAAGAGTCACAGGAGATGTTAGTTGATGATTCTGACCGAGGAGAAGATTCAGTACAGATCCCCATGGAGATTAGCAAAACACTCCATTCACCAAAAACACCAGACCCTAGGACTGACCCGTCTGATATTAACATCTCTGATGAAATGTCTAAAACTACCGTATGGAAATCTCTTAGTTCCAACCAAAAGGACACAAATCGTACAGGGCACAAAAAGGATTGCCAGTGAAATGGAACCTTAGGAATTCCTCAGCCATTGGAAACCACACGCAAAAACAGATACAGTCAAACATGTTTTTTCCTTCATACTCTTTTAAACATTGATTCagacaaacattcacacacacacaaactcacacacactaaatgtACCATAATTAAGTAAAGGAGTAGAAGATTATACTTCTCTAAACCAAACCAGGTTTTTTTAATATGTGTTACATTGAGCAAACACTGTCTATGACGTTGCAGTACTGTgccatatatgtgtatattattttatttcctggTGACATTATTTATGAATTCTTGTAAAACAATATAATGGAAAATGCTGTAgacattttaaacttaaattaatatttgacatactactgtatatgtgtTGTGGTGCATTGTCAGACGAATATGAATAATCTCAGTAATAAGAGTAGTGTGTTTTCAGAATGTGCTTTAGCCGGCTGAATGGTTAGagtaataattttaaattcatAACATTTATGTGCCTGAAGATCCTAATTGTTCCAGTGAGAAATAGATTTACTGGGTAAATATTGGAGGCTCAGAACCAGAATGTATCGTATTGTAATAAATTAGTCACTGATAAATATACTCAGTGCACTTAAGAATGAGCAGTCCTGAACCCCCTGTTTTGTGTGATTGTTTTATGTTAGTCAGTGCTGAAAATGAGCAATAAAAGGCAACCAGGGATGACAGTGGGTAAGAAGAGGCTGGGTGATTGtcaaatagcatttttttttggaaccaTCTGTAAAATGTTCTCTTCGTTCGTAAGCACACCCCTCTGTAATAAGCACTGTAGAAGTGAATTAAACAGATATATGTTaaatacaagaaaaagaaaggctCCTCAGGGTATAGAGATGGAACCTTCATGTAAAGCCACGCTCTGcaattttaaaagccattttatGATGTGTACAGTACAATCCTGTACACATGAAATGCAGTTTATTTCAGATAACGCTAAATCATTAAgctaaaaacaacaatcttaTCCCATTTTCAGTATATACAAGATATTGACATAATTGTTTACAAACAGAAACAGTGTATTTTAAGCCTTTTCAGGTTACTGACTATTATTTCTTGCATCTGTTCTGTGTGAGAATTTCTTCAGctttaaataagcaaattaaGTGGCAGGGTCACTTGTTTTGCTAGATTTTTAAGCACCTCTCTCCATCTTTATTACAGACcaaccattgttttttttatgtgtataatatgttttattttaaccataataaaaagaaatatttatttgtagttGCACTTTGTGTAGATAAACAACAGATATGATTTTCTATTTTACGAGAATTATTTCAGAGAGTAaaagtgtgtatttattttagtaaaatttctttttgtatGTAATTGTAATAACAGCTCAGTGAATGCATTTACCTGCATGGGTAACACAAATGTATATTTCTCACAGGAAACTGGCTTTAGCTTCCATACAAATGTCCATTAGGCAATACTTAACCATAACAACAGTTTCAGTGCAGATAGGGATATTTAGGAATGTCTACAAATGCATTAGAATGTCATCAATACTGCATCAGTGTTGTAAATGTTCAGATCATGGATGTGCTGTATACTGGATTCTGATTGTCACTGACACTGTGATGCtcactacatttaaaaaaaaacttttgaaaacgttttttttgaGGGGGAGGATGGGTCAGTTTTCTCATGCTGCCATTACTCAATAAATGCATGTCACTGAGAAACTGAATGTCATTTTAATGAAATGACTTAACAGATTTACTTGATAAGCATTTGAGCAGTACAGCCTTAGTTGAGCAATTAACATCTTTCTCAGAGTCACTTGGCAGCATTTATATCAAGACTGCTTTACTTCTTATTCTGACAGCCTGTGTTTCCCTGGTCTATGGGAACTTGTCTAGACCATTCAATTCTACACTTAACCAATTAGTCTCTTTGGCCATAAAACTACCATAAGATACCTCATGCCCTGCTGCTAACTGTATCTttatacatttgtgtttttttttttaactattaatgaaattaagttcaaattaattaaaatatagtatatgGAAATGACTAGTCCAGTCCGTTATCAGTACTAATATAAATACTATGGCATGACAAGGTTTAAGCACCCCTGGTCAAGTAGTTAAGTGAGTAGAAAATAAACTTATCTTTTTTAGACATAAAGTTAAAGAATATActttctttttaaacattttaaaattatagcattattttgttttgagcACTTTCAGAGTAAAAGGGGAAAGGGAGGATAAAGTGAAAGGGAAAGGTTCGGTCTTTCTTAGAGTTCTGAACTCACAAAAGACTTTTACCAAAGTCTTAGACCTTAATTAGCTTGCTATAGCTATGGCTTGTTGGCAGTAGTCAAGATAATGTCTGGAAGATCTATTAAAATCATATAATTGGTAGCAGGAGTGGTGGTACTCTGTTCTACTGTGCATAAACACCTTTACAAATATGGCCttcataaaattacaaaattcaTTAGAAAGGTAAAAGGTAACATTAAAAAGAGCCTGATGTATtttgaaagccagtaatgtgaGCTTAAGTGTAAGATTTATtcatatttcactcattttactTTTCATAATAATATTTTGCTATTTTGATCAGGGGTGCTGAAACGTTTGAATGTGAATAATCTTCTTAACACAGTTGTGTGGAAACAGAATGTTAATTACATGAATAACCTGCCAATAAACTGTTCTGATAATTGAAGGATATTTTAGGTACGTGTCAGTTGAAAATGTTATGTAGGCCAAAGCTAATAAAAAGTACTGTAACTCTA

Function

NR:

description
PREDICTED: electroneutral sodium bicarbonate exchanger 1-like isoform X1

GO: NA

KEGG:

id description
K13859 SLC4A8; solute carrier family 4 (sodium bicarbonate cotransporter), member 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254277.3 True 6464 mRNA 0.42 25 36082114 36114040

Neighbor

gene id symbol gene type direction distance location
LOC103025932 LOC103025932 coding downstream 42979 36036372 ~ 36039135 (-)
LOC103029739 NA coding downstream 52339 36013177 ~ 36029775 (-)
LOC103030273 prkcda,LOC103030273,LOC108440644,LOC107673500,LOC107712078,LOC107721176,LOC107667398,LOC107582675 coding downstream 82197 35982094 ~ 35999917 (-)
ddi2 ddi2,LOC107673502,LOC107721177,LOC107667352,LOC107712079 coding downstream 102568 35969145 ~ 35979546 (-)
LOC103031953 NA coding downstream 114324 35960653 ~ 35967790 (-)
LOC103030168 itpr1a,LOC108440748 coding upstream 246712 36360752 ~ 36427709 (-)
LOC103022488 LOC108439971 coding upstream 319892 36433932 ~ 36442755 (-)
smarcc2 smarcc2,LOC107711050,LOC107667400,LOC107748388 coding upstream 345943 36459983 ~ 36480201 (-)
LOC103029840 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC106565516 coding upstream 374543 36488583 ~ 36520108 (-)
LOC103029516 NA coding upstream 615923 36729963 ~ 36733391 (-)
LOC111193773 NA non-coding downstream 5311 36075478 ~ 36076803 (-)
G116171 NA non-coding downstream 15835 36065615 ~ 36066279 (-)
G116166 NA non-coding downstream 37918 36043366 ~ 36044196 (-)
G116097 NA non-coding downstream 133932 35947731 ~ 35948182 (-)
G116076 NA non-coding downstream 148868 35930934 ~ 35933246 (-)
LOC111193775 NA non-coding upstream 80505 36194545 ~ 36254205 (-)
G116219 uroc1 non-coding upstream 210100 36324140 ~ 36330054 (-)
G116279 LOC103024058,LOC108440764,LOC107748389,LOC107585116,LOC107673509,LOC107711047,LOC106583201 non-coding upstream 236002 36350042 ~ 36360601 (-)
G116285 LOC103021650,LOC107570608,LOC106950810,LOC105897346,LOC106567035 non-coding upstream 336888 36450928 ~ 36458089 (-)
LOC111193777 NA non-coding upstream 345703 36459743 ~ 36483675 (-)
LOC103028059 ghrl other downstream 19830 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 123296 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 201823 35869803 ~ 35880291 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other downstream 266792 35813621 ~ 35815322 (-)
LOC103033855 oxtr,LOC107749620 other downstream 1230962 34825836 ~ 34851152 (-)
LOC103023810 NA other upstream 908135 37022175 ~ 37031363 (-)
G116581 eif4b,LOC108441049 other upstream 927321 37041361 ~ 37045788 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 2119434 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 2267230 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 2516597 38630637 ~ 38899446 (-)

Expression


Co-expression Network