G121312 (LOC108439764,LOC107700025,LOC107715360,LOC107756158,LOC107669388,LOC107548223,LOC108279199)


Basic Information

Item Value
gene id G121312
gene name LOC108439764,LOC107700025,LOC107715360,LOC107756158,LOC107669388,LOC107548223,LOC108279199
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 11615161 ~ 11620970 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU163651
TTgatttgaatattttattgttccGTTGCAGCAGCCAACAAGTCGGTCCATACACTCCAGCggaatgcaaataaatgcatctACACATCACAGTTCTCTCTTGTGCATTTCTAACTTGatttttaatatgttataactgtaaaagaaaaagtgaggATTTTATATAGCTAGTTGCTCACAAAAGCATGTGTATTTATGCATCGCATTTATGTGAACATCCCTTTTGGTTTATAGAACCACTGGTCATAGCAGACCACAAAATATTTTCATgtacaaactttttaaaagaaaaaaaaaaaaaaaaaaaaaaaagaaaaagacactTCAAACCAAAAGGTCTTATACTGACCTTATACATTCGATTACGTACAAAAACATGTTCAGCTACAAATGACAAGGAACCCTTAAAAGTCTGTTTTCCATCAGTGATGAAAATAGTTGattcttttaaaatgtagtaaacTGTCAAGAGTTTGGTAAAGGTAATCTGAGTTTAAGGAATGGTAAAACACAGAGCACCAACACTGACCGTCTACAGACAACGGCCTGCCTGGTCACCAGAAGGACTAGAAGGAGCTATAGCTTGTTACCAGTAAATTATCTTTATATTACAAAGCAGTTCTGAAGAGAGCTGTGAGATGGAAAATAAGTAGGGTTTTGTGttgcaaaatatatttacaaaaatctGAGGTTTCATCCAGGTACAGACTAAATTTTTCTAAGTGTGTATCTTAATAAAAGTGCCAATCTAAGAGTCAAAAATCAGAACGCTTTTTCAGATGTTTCAATATTTCTTCAGTCTCATGGATGCATTTGCAACATAGTGCAATCCCTCACTATAAACTACATGGTCCTGAACTATAGTGATGATGCTGGTGCTCACTTTAAGTGGCCATTCTTTGGGTTTTAAACCCAAAGTTGGTCAACTCCGCACTGATCCActacataatattatggtcctTATATTTGCGATGTTTCTGGTGAACCTACACGAGGTGGATTTCAGGTGCCATCATTCAGCAGCTTAGAACAGCTTGATCATGCTTTCCCTGGACTTGCCAACACCAACCCATTTTACTGGCACCTGTAAAAAGTCCTCAATGAAGCAAATGTAGGCCTGTGCCTGAGCTGGCAGTTCATCAAAGTTGCGTGCTCCCTCTGTGCTGCAGCACCACCCAGGTAATGTCTCGTAGGTCACAGAGACCTTCGTCAGGACATCCATGTTAGctggaaagCTGGGCAAGGGCTTGCCATCAACTGTATAGGCCACACCCACTTTTATCTCAGGCAATGTATCAAGTATGTCCAACTTGGTCAGAGCAATAGCTGTGAAACCGTTGACCATGTGAGCATAACGGACCAAAACCAGGTCCAGCCACCCACAGCGTCGCCGTCTGCCTGTTGTCACTCCAAATTCTCTTCCTTTGGACTGCAGCAGATCACCGACGTCATTGTTCTGCTCTGTAGGGAACGCTCCAACACCCACTCTGGTGGTGTATGCCTTCACCACACCATAGACTCGTCCAACATGGGACGGGGGCACACCAAGGCCTGTGCACACACCTCCAACAGTGCAGTTTGATGAGGTCACAAACGGATAGGTCCCAAAGTCAATATCTAGGAGGGCTGCATTAGCTCCTTCCACCAGAATCTTCTTGCTAGGTCCAGTTAGGGCTTTATGCATGAAGTAAACCCCATCAGTTACCAGAGGACGCAATCTCTCTGCATAACCCATTAGTTGCTCTAGTTCTGCATCAACATCAATGTTAAGGTTGGGGTACATGGTCTGAAAATGGCTTGCCAGTACACGGAACTTTTCTTCAAAAACTGAGAAATCTGAGACCAAATCACATACTCTGAGTCCATTGCGTGCTGCCTTAGAGGAGTACGCAGGACCAATGCCCTTTTTAGTAGTTCCCAAATTCTTCCCTGCCTGCTGCTGCCTCTGTTGCTCTTGTATCCCGTCAACAGCCTGGTGGAAATTAAACACAATATGTGCACGGTCTGAAATCTTCAGTCTCTCTTCCCAACCCTGTAGccCATTGCCTTTCTGCATATTCTTCTCAGCCTCTTCAAACAACCCTGGTAGATGAATCACAACTCCATTTCCGATAAAAGAGAGGGCCTTTTTATTGAGAACTCCGCTCGGTAACAGGTGAAAGTCGTATTCCACAGAGTCCACGACCACCGTGTGTCCCGCGTTGTTTCCTCCcTGGCATCTGCACACAATGTCGGCGTCCATAGCCAACAGGTCCACCACTTTCCCCTTCCCCTCGTCTCCCCACTGAGCCCCCAGCACCACGGTCACTTTATTCTGCGGCTCCCGTGGAGTCCGGAGCGCCTCCACCGCGCCGCTCTCCCGCGAGCGCTTCACCGCCGGCTCGCCATTCAAACACGCCGTTTCCCGACCGTTCGACATCGTGCTGTCCGCTGCCATGCTG

Function

NR:

description
PREDICTED: adenylosuccinate synthetase isozyme 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU163651 True 2441 lncRNA 0.45 13 11615161 11620970

Neighbor

gene id symbol gene type direction distance location
LOC103028746 NA coding downstream 2443 11606619 ~ 11612718 (-)
LOC103029060 NA coding downstream 26294 11585916 ~ 11588867 (-)
LOC103029369 pfdn2,LOC103029369,LOC108439788 coding downstream 30348 11581759 ~ 11584813 (-)
LOC103029689 zgc:110540,LOC103029689,LOC108439787,LOC108278442,LOC107700028,LOC105011305 coding downstream 38388 11572893 ~ 11576773 (-)
LOC103030014 LOC108439763,LOC108278891 coding downstream 47573 11531938 ~ 11567588 (-)
LOC103026606 nxf1,LOC108278769,LOC107669360,LOC107715364,LOC107559416 coding upstream 87214 11708184 ~ 11719860 (-)
LOC103024948 NA coding upstream 120309 11741279 ~ 11751785 (-)
LOC107197275 NA coding upstream 208126 11829096 ~ 11858919 (-)
LOC103037906 NA coding upstream 254018 11874988 ~ 11916264 (-)
LOC111193819 NA coding upstream 395844 12016814 ~ 12024568 (-)
G121241 NA non-coding downstream 1719 11613126 ~ 11613442 (-)
G121227 NA non-coding downstream 123314 11491625 ~ 11491847 (-)
G121226 NA non-coding downstream 136489 11478064 ~ 11478672 (-)
G121221 NA non-coding downstream 166174 11447275 ~ 11448987 (-)
G121211 NA non-coding downstream 241935 11367248 ~ 11373226 (-)
G121318 NA non-coding upstream 2372 11623342 ~ 11626799 (-)
G121328 NA non-coding upstream 46143 11667113 ~ 11671048 (-)
G121330 NA non-coding upstream 57142 11678112 ~ 11678588 (-)
LOC111193891 NA non-coding upstream 78959 11699929 ~ 11701791 (-)
G121344 NA non-coding upstream 108268 11729238 ~ 11731160 (-)
G121209 NA other downstream 249674 11363377 ~ 11365487 (-)
LOC111193818 NA other downstream 251855 11362860 ~ 11363306 (-)
LOC111193889 NA other downstream 252613 11357513 ~ 11362548 (-)
G121084 mat2b,LOC107756808,LOC107590055 other downstream 915362 10698000 ~ 10699799 (-)
G121080 hnrnpab,LOC108441033,LOC107653368,LOC107731089,LOC107599380,LOC107713567 other downstream 929135 10681479 ~ 10686026 (-)
LOC111193892 banf1,LOC105010953,LOC108439777,LOC105907417,LOC105019098 other upstream 140156 11761126 ~ 11765088 (-)
G121351 NA other upstream 153934 11774904 ~ 11778872 (-)
G121377 NA other upstream 320824 11941794 ~ 11966777 (-)
LOC107197484 NA other upstream 362444 11983414 ~ 12012377 (-)
G121381 NA other upstream 401639 12022609 ~ 12031011 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_03853517_03857679 ADSSL, PURA2 coding CI01000006 null 3853517 ~ 3857679 (-)