G61076


Basic Information

Item Value
gene id G61076
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 945208 ~ 947575 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU69555
ATAGCAAATACAATATAATTGCAAAGTGCACCCAGTGATACAGTGACGAAAATACTCAAGTCAAATGGAAAGCATTTTTTTGCCATTTAGTTTTACAACTTTGGTCATAGATAAAAAAAAAAAGAGCACTATATAGCATGACATAAAAAGCAGCCAGTTTTTACTAAAAATAAAAAATGGAGCCTCCGTCGCCTGCTTCTGCCTGCGGTGACTCCTGGGTGAAGGGTGTGGAATTGGGTTGGGGTGGTTTATGAGGGGAGGGGGGATCCAGGCTCCTTCCCGGAGTCACTGCTCTCACTCATTTGTCTCTTCATCACAATCTCCCGGGCAACACAGGTTATTTGACCATTTGTCACTGTGTAGGTGCCAGCCCTGCCAATCAAAATCAAGAACAACTTGCATGAAAACCAGGACTCAGGAGCTGAGTCAAGCCAAACACAAAACCATTCTTAAACTCACTTCTGCTGGGATTCAGATCCATTGGGTGTCCCCATTTGATTCTGCTTCCCAAAGAAGAAACTGGACCACCAGTGGCCAGAGTCCTGTCGTGCCAGACCTGCCATGAAATTGGACATTGAGCTTTGCTATTCCTTTACAATGAAAGCTGACATATATATATATATATATACATACAATATAATGACTGACTATATGTATATTTTATGTGGATTTTAGGGTATTGGGATGATTTTCAGATGATATACCTGGTGGGTGTGGAATGACCTCCCCAGTGTACTCCGAACTGCCACAGGAACTGTTGCTAGATGTAGATCCAATGCCTTCGGTAGTAATCATGGGTGGCGATAAGGGAACCGCTTGATGGAATTGCTGCCATTTTCCCCGTCCTCTAAGTGTCAAGTGGCAAGATGGAAAGATGGAAAACCTGTTTTTTTGGTGAGTGCTGATGTTGGTAATGCACCAAAAGCAAGGCTTGGTCGGGTAAACGCTAGGCGACGGGGCCCATTTGTAGTTTGTTTTTTTGGGTGAGACCCTCCAAGGTCTTTCGCTCCTCTGCTCCAAATTCT
>TU69558
ATAGCAAATACAATATAATTGCAAAGTGCACCCAGTGATACAGTGACGAAAATACTCAAGTCAAATGGAAAGCATTTTTTTGCCATTTAGTTTTACAACTTTGGTCATAGATAAAAAAAAAAAGAGCACTATATAGCATGACATAAAAAGCAGCCAGTTTTTACTAAAAATAAAAAATGGAGCCTCCGTCGCCTGCTTCTGCCTGCGGTGACTCCTGGGTGAAGGGTGTGGAATTGGGTTGGGGTGGTTTATGAGGGGAGGGGGGATCCAGGCTCCTTCCCGGAGTCACTGCTCTCACTCATTTGTCTCTTCATCACAATCTCCCGGGCAACACAGGTTATTTGACCATTTGTCACTGTGTAGGTGCCAGCCCTGCCAATCAAAATCAAGAACAACTTGCATGAAAACCAGGACTCAGGAGCTGAGTCAAGCCAAACACAAAACCATTCTTAAACTCACTTCTGCTGGGATTCAGATCCATTGGGTGTCCCCATTTGATTCTGCTTCCCAAAGAAGAAACTGGACCACCAGTGGCCAGAGTCCTGTCGTGCCAGACCTGCCATGAAATTGGACATTGAGCTTTGCTATTCCTTTACAATGAAAGCTGACATATATATATATATATATACATACAATATAATGACTGACTATATGTATATTTTATGTGGATTTTAGGGTATTGGGATGATTTTCAGATGATATACCTGGTGGGTGTGGAATGACCTCCCCAGTGTACTCCGAACTGCCACAGGAACTGTTGCTAGATGTAGATCCAATGCCTTCGGTAGTAATCATGGGTGGCGATAAGGGAACCGCTTGATGGAATTGCTGCCATTTTCCCCGTCCTCTAAGTGTCAAGTGGCAAGATGGAAAACCTTTTATTTTTGGTGAGTGCTGATGTTGGTAATGCACCAAAAGCAAGGCTTGGTCGGGTAAACGCTAGGCGACGGGGCCCATTTGTAGTTTGTTTTTTTGGGTGAGACCCTCCAAGGTCTTTCGCTCCTCTGCTCCAAATTCT
>TU69561
ATAGCAAATACAATATAATTGCAAAGTGCACCCAGTGATACAGTGACGAAAATACTCAAGTCAAATGGAAAGCATTTTTTTGCCATTTAGTTTTACAACTTTGGTCATAGATAAAAAAAAAAAGAGCACTATATAGCATGACATAAAAAGCAGCCAGTTTTTACTAAAAATAAAAAATGGAGCCTCCGTCGCCTGCTTCTGCCTGCGGTGACTCCTGGGTGAAGGGTGTGGAATTGGGTTGGGGTGGTTTATGAGGGGAGGGGGGATCCAGGCTCCTTCCCGGAGTCACTGCTCTCACTCATTTGTCTCTTCATCACAATCTCCCGGGCAACACAGGTTATTTGACCATTTGTCACTGTGTAGGTGCCAGCCCTGCCAACTTCTGCTGGGATTCAGATCCATTGGGTGTCCCCATTTGATTCTGCTTCCCAAAGAAGAAACTGGACCACCAGTGGCCAGAGTCCTGTCGTGCCAGACCTGCCATGAAATTGGACATTGAGCTTTGCTATTCCTTTACAATGAAAGCTGACATATATATATATATATATACATACAATATAATGACTGACTATATGTATATTTTATGTGGATTTTAGGGTATTGGGATGATTTTCAGATGATATACCTGGTGGGTGTGGAATGACCTCCCCAGTGTACTCCGAACTGCCACAGGAACTGTTGCTAGATGTAGATCCAATGCCTTCGGTAGTAATCATGGGTGGCGATAAGGGAACCGCTTGATGGAATTGCTGCCATTTTCCCCGTCCTCTAAGTGTCAAGTGGCAAGATGGAAAGATGGAAAAACCTTTTATTTTTGGTGAGTGCTGATGTTGGTAATGCACCAAAAGCAAGGCTTGGTCGGGTAAACGCTAGGCGACGGGGCCCATTTGTAGTTTGTTTTTTTGGGTGAGACCCTCCAAGGTCTTTCGCTCCTCTGCTCCAAATTCT
>TU69562
ATAGCAAATACAATATAATTGCAAAGTGCACCCAGTGATACAGTGACGAAAATACTCAAGTCAAATGGAAAGCATTTTTTTGCCATTTAGTTTTACAACTTTGGTCATAGATAAAAAAAAAAAGAGCACTATATAGCATGACATAAAAAGCAGCCAGTTTTTACTAAAAATAAAAAATGGAGCCTCCGTCGCCTGCTTCTGCCTGCGGTGACTCCTGGGTGAAGGGTGTGGAATTGGGTTGGGGTGGTTTATGAGGGGAGGGGGGATCCAGGCTCCTTCCCGGAGTCACTGCTCTCACTCATTTGTCTCTTCATCACAATCTCCCGGGCAACACAGGTTATTTGACCATTTGTCACTGTGTAGGTGCCAGCCTTCTGCTGGGATTCAGATCCATTGGGTGTCCCCATTTGATTCTGCTTCCCAAAGAAGAAACTGGACCACCAGTGGCCAGAGTCCTGTCGTGCCAGACCTGGTGGGTGTGGAATGACCTCCCCAGTGTACTCCGAACTGCCACAGGAACTGTTGCTAGATGTAGATCCAATGCGCCTTCGGTAGTAATCATGGGTGGCGATAAGGGAACCGCTTGATGGAATTGCTGCCATTTTCCCCGTCCTCTAAGTGTCAAGTGGCAAGATGGAAAGATGGAAAAACCTTTTATTTTTGGTGAGTGCTGATGTTGGTAATGCACCAAAAGCAAGGCTTGGTCGGGTAAACGCTAGGCGACGGGGCCCATTTGTAGTTTGTTTTTTTGGGTGAGACCCTCCAAGGTCTTTCGCTCCTCTGCTCCAAATTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU69555 False 1025 lncRNA 0.44 3 945208 947575
TU69558 False 1018 lncRNA 0.44 3 945208 947575
TU69561 False 948 lncRNA 0.44 4 945208 947575
TU69562 True 794 lncRNA 0.47 5 945208 947575

Neighbor

gene id symbol gene type direction distance location
CI01000010_00929453_00930078 NA coding downstream 14671 929061 ~ 930537 (-)
CI01000010_00902754_00903080 NA coding downstream 41978 902517 ~ 903230 (-)
CI01000010_00861290_00870510 NA coding downstream 74062 860480 ~ 871146 (-)
CI01000010_00810923_00813645 NA coding downstream 131338 810447 ~ 813870 (-)
CI01000010_00691767_00731442 MAGIXA, MAGIX coding downstream 213766 691767 ~ 731442 (-)
CI01000010_00952202_00958971 PTK6 coding upstream 4317 951892 ~ 959383 (-)
CI01000010_00964665_01011716 NOL4L, NOL4LA coding upstream 16735 964310 ~ 1011716 (-)
CI01000010_01049083_01049298 NA coding upstream 101490 1047761 ~ 1049622 (-)
CI01000010_01064881_01066044 GPR173 coding upstream 116704 1064279 ~ 1066408 (-)
CI01000010_01146061_01150177 WASB coding upstream 198427 1146002 ~ 1150177 (-)
G61085 NA non-coding downstream 13055 892327 ~ 932153 (-)
G61127 NA non-coding downstream 54376 885941 ~ 890832 (-)
G61117 NA non-coding downstream 100768 840761 ~ 844440 (-)
G61115 NA non-coding downstream 105085 838462 ~ 840123 (-)
G61105 NA non-coding downstream 139846 805070 ~ 805362 (-)
G61153 NA non-coding upstream 71605 1019180 ~ 1019414 (-)
G61160 NA non-coding upstream 90654 1038229 ~ 1041213 (-)
G61161 NA non-coding upstream 97054 1044629 ~ 1045145 (-)
G61090 NA non-coding upstream 104969 1052544 ~ 1053837 (-)
G61045 NA other downstream 369697 572753 ~ 575511 (-)
G61888 NA other upstream 296894 1244469 ~ 1246018 (-)
G61965 NA other upstream 476850 1424425 ~ 1545051 (-)
CI01000010_03527436_03530341 NA other upstream 2582095 3527408 ~ 3530359 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other upstream 2942494 3890069 ~ 3899058 (-)
G64237 NA other upstream 3282375 4229950 ~ 4236416 (-)

Expression


Co-expression Network