G62540


Basic Information

Item Value
gene id G62540
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3277706 ~ 3314153 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU71220
CTCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACACACCTCTACACTGTCCTTCCGGGAGAGACAGGGAGATGATAGTTTAGGGAGTGGCCAAGCAGGGGCTGTACCCTACAACCCCACCCACCTTATCCTACAATGAAGAAATGAATCCATTTTAGAATGGTGTTATTCAGCGCCATGGTTCCAAAACTTGCAGGTCAAACAATGCTCATTTAGCCATCAGTCCTCATAACTTCTGAATCTTCTCAGCTACCACAATGGGGTTCTCCTTGCGGATGCGGGCGGCGGCGGCTCCTCGGTAGTCGTAGGGACAGTCATGTTTGTCAGAATAACGGTGGATAGCGCAAAACAGGTTACCGCAGCGACAGTCAAAGCCTATAGACACAAAAGCGAGTGGATTCAGTCTGTCATGTATTCCTGCTGGGTGAAAAAGTTTAGCAGTGATTTAGAAAGGGCAGGAAACAAGCAGGACCATGTGAAATGCAGCACTAACCTGCAATATGCAGTCTGACTACAGATTCAAACTAGGACAAATTAACTCAAATTGATGGACATATAATATAAATGCAGTCAATTTTGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU71220 True 603 lncRNA 0.46 2 3277706 3314153

Neighbor

gene id symbol gene type direction distance location
CI01000010_03204475_03207149 MPEG1.2 coding downstream 70557 3204435 ~ 3207149 (-)
CI01000010_03109809_03114298 NPL coding downstream 163408 3109803 ~ 3114298 (-)
CI01000010_03101723_03103968 SEC22BB, SEC22B, SEC22B.S, SEC22B.L, S22BB coding downstream 173548 3100588 ~ 3104158 (-)
CI01000010_03033615_03059357 NOTCH2 coding downstream 218349 3032384 ~ 3059357 (-)
CI01000010_03025386_03030144 SLC35A3A, SLC35A3 coding downstream 247427 3024271 ~ 3030279 (-)
CI01000010_03494576_03500309 MPND coding upstream 180153 3494306 ~ 3500309 (-)
CI01000010_03517080_03524389 FSD1 coding upstream 202707 3516860 ~ 3524389 (-)
CI01000010_03527436_03530341 NA coding upstream 213255 3527408 ~ 3530359 (-)
CI01000010_03544215_03547481 PRRG1 coding upstream 229367 3543520 ~ 3547481 (-)
CI01000010_03557384_03566580 TAB3 coding upstream 242779 3556932 ~ 3567714 (-)
G62536 NA non-coding downstream 1643 3275088 ~ 3276063 (-)
G62513 NA non-coding downstream 68973 3178844 ~ 3208733 (-)
G62476 NA non-coding downstream 85341 3188531 ~ 3192365 (-)
G62507 NA non-coding downstream 106983 3170523 ~ 3170723 (-)
G62506 NA non-coding downstream 107277 3170165 ~ 3170429 (-)
G62616 NA non-coding upstream 53082 3367235 ~ 3388238 (-)
G62596 NA non-coding upstream 77183 3391336 ~ 3436108 (-)
G62636 NA non-coding upstream 88154 3402307 ~ 3402818 (-)
G62648 NA non-coding upstream 122545 3436698 ~ 3436928 (-)
G62650 NA non-coding upstream 124193 3438346 ~ 3438580 (-)
G61965 NA other downstream 1732655 1424425 ~ 1545051 (-)
G61888 NA other downstream 2031688 1244469 ~ 1246018 (-)
G61045 NA other downstream 2702195 572753 ~ 575511 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other upstream 575916 3890069 ~ 3899058 (-)
G64237 NA other upstream 915797 4229950 ~ 4236416 (-)
CI01000010_04612793_04613017 SMIM15 other upstream 1298343 4612460 ~ 4613135 (-)
G64564 NA other upstream 1735002 5049155 ~ 5242926 (-)

Expression


Co-expression Network