RNA id: TU71220


Basic Information

Item Value
RNA id TU71220
length 603
lncRNA type read_through
GC content 0.46
exon number 2
gene id G62540
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3277706 ~ 3314153 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACACACCTCTACACTGTCCTTCCGGGAGAGACAGGGAGATGATAGTTTAGGGAGTGGCCAAGCAGGGGCTGTACCCTACAACCCCACCCACCTTATCCTACAATGAAGAAATGAATCCATTTTAGAATGGTGTTATTCAGCGCCATGGTTCCAAAACTTGCAGGTCAAACAATGCTCATTTAGCCATCAGTCCTCATAACTTCTGAATCTTCTCAGCTACCACAATGGGGTTCTCCTTGCGGATGCGGGCGGCGGCGGCTCCTCGGTAGTCGTAGGGACAGTCATGTTTGTCAGAATAACGGTGGATAGCGCAAAACAGGTTACCGCAGCGACAGTCAAAGCCTATAGACACAAAAGCGAGTGGATTCAGTCTGTCATGTATTCCTGCTGGGTGAAAAAGTTTAGCAGTGATTTAGAAAGGGCAGGAAACAAGCAGGACCATGTGAAATGCAGCACTAACCTGCAATATGCAGTCTGACTACAGATTCAAACTAGGACAAATTAACTCAAATTGATGGACATATAATATAAATGCAGTCAATTTTGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71216 lncRNA downstream 1643 3275088 ~ 3276063 (-) True G62536
TU71193 lncRNA downstream 68973 3178844 ~ 3208733 (-) True G62513
TU71156 lncRNA downstream 85341 3188531 ~ 3192365 (-) True G62476
TU71187 lncRNA downstream 106983 3170523 ~ 3170723 (-) True G62507
TU71186 lncRNA downstream 107277 3170165 ~ 3170429 (-) True G62506
TU71306 lncRNA upstream 53082 3367235 ~ 3388238 (-) False G62616
TU71305 lncRNA upstream 58152 3372305 ~ 3372787 (-) True G62616
TU71284 lncRNA upstream 77183 3391336 ~ 3436108 (-) True G62596
TU71328 lncRNA upstream 88154 3402307 ~ 3402818 (-) True G62636
TU71340 lncRNA upstream 122545 3436698 ~ 3436928 (-) True G62648
CI01000010_03204475_03207149.mRNA mRNA downstream 70557 3204435 ~ 3207149 (-) True CI01000010_03204475_03207149
CI01000010_03109809_03114298.mRNA mRNA downstream 163408 3109803 ~ 3114298 (-) True CI01000010_03109809_03114298
CI01000010_03101723_03103968.mRNA mRNA downstream 173548 3100588 ~ 3104158 (-) True CI01000010_03101723_03103968
CI01000010_03033615_03059357.mRNA mRNA downstream 218349 3032384 ~ 3059357 (-) True CI01000010_03033615_03059357
CI01000010_03025386_03030144.mRNA mRNA downstream 247427 3024271 ~ 3030279 (-) True CI01000010_03025386_03030144
CI01000010_03494576_03500309.mRNA mRNA upstream 180153 3494306 ~ 3500309 (-) True CI01000010_03494576_03500309
CI01000010_03517080_03524389.mRNA mRNA upstream 202707 3516860 ~ 3524389 (-) True CI01000010_03517080_03524389
CI01000010_03527436_03530341.mRNA mRNA upstream 213255 3527408 ~ 3530341 (-) False CI01000010_03527436_03530341
CI01000010_03544215_03547481.mRNA mRNA upstream 229367 3543520 ~ 3547481 (-) True CI01000010_03544215_03547481
CI01000010_03557384_03566580.mRNA mRNA upstream 242779 3556932 ~ 3567714 (-) True CI01000010_03557384_03566580
TU70569 other downstream 1732655 1424425 ~ 1545051 (-) True G61965
TU70485 other downstream 2031688 1244469 ~ 1246018 (-) False G61888
TU70488 other downstream 2031688 1244469 ~ 1246018 (-) False G61888
TU69515 other downstream 2702195 572753 ~ 575511 (-) True G61045
TU71288 other upstream 215517 3531516 ~ 3531652 (-) True G62599
TU72970 other upstream 575916 3899741 ~ 3899911 (-) False G64080
TU72971 other upstream 575916 3899741 ~ 3899911 (-) True G64080
TU73142 other upstream 915797 4229950 ~ 4236416 (-) False G64237
TU73132 other upstream 1298343 4613485 ~ 4613556 (-) True G64230

Expression Profile