LOC103040167 (gpr4,LOC108278409,LOC107743733,LOC107669721,LOC107548551)


Basic Information

Item Value
gene id LOC103040167
gene name gpr4,LOC108278409,LOC107743733,LOC107669721,LOC107548551
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14540407 ~ 14577509 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236826.3
GAGCTGTACCGGGctgtagtgctgctgctgctgctgctgaaagtGACCGGGAGTTTACTGACTGAGtatctgactgactgactgacagctgtGTTCCCCTCAGGCTTCAGTCCGGACTGGGCTTTATTTTACTCTCCAGGAGCTTCAGCTTCATGAGATGGACGTCGCTGATGGAGCCAAGCAAAATAAATCAGAGAACAGTGTCCAGTGAGGGCAGGGAGGGAGGAGACCATGCTGTGGAGCCCAGCTGCTGCATGCTGCTAAAGGAGCAGGCCCTTTATTTCTCTTCCACTCGTCCACTCGTCCCTTGTGATTTTTCCTCAAGGATTAATTTCACGTTCATGGTTGAAGCTGGCTATGCTGGAATAACTTTGTGTTAGTTTTCCCGGCAGCCTATTTttgtctctttgtctttttttttgtgtgtttctttgcGGAAAGGTTAAAGGACCAGCCATGAAGTGTGCTAGAGACATATGACACCCTGAGCAAACCATGCTTCATCAGCATGGGCATGGCCAGTGTTTTCTGTGCCTCAGTCAAAAAACTGAAGACATATGAAGACCCAAAGCGAGGAATGCCCCATGTGGAGTTTCCTGTCGAAGTGGATAGTTACGGTGTTGTTGTGTTCAAGCAAATCTCAACATTCCTCCACAATATGGCCTGACATGTAAAGAGACAGTAAAGAGATCAGCGATTTCTCGATCATTACGTCTCTCAAGTCTCGAAAAACACTTAAGAGATCATGTGTAACACGACTTGCAATGTGGACTCAAACATTGACCAGTTCTTCCAGCCTGTGCTGTACATTATTGTTATCATCCTTGGCTTCCCTACCAACTGTATGGCCCTGTGGGCCGCCTACATGCAGGTGAGGCAAAAGAACGAGCTGGGCATCTACTTAATCAGCCTGTCTGTGGCTGATCTTTTGTACATAGCCACTTTACCACTGTGGATTGACTACTTCTTGCAACATGATAACTGGATCCATGGGCCAGGGTCCTGCAAAGTCTTTGGCTTCATCTTTTACACCAACATCTACGTCAGCATCGCGTTCCTCTGCTGCATTTCCTTGGATCGCTACTTGGCAGTGGCCTATCCTCTGAAGTTCGCCAAGGTGCGCTGTGTCAAGACAGCCACTCTGGTTAGCGCCATCGTTTGGGTTATAGAAGTGGTTGCCAACTCGGCACCATTGTTCCACGATGAGCTCTTCGAAGCGCGCTATAACCGCACCTTCTGCTTTGAGAAATATCCAATGCAGGACTGGGTGGCAGGCATGAACCTCTACCGAATCTTTCTGGGCTTCTTGGCACCCTGGTTCTGTATGTTAGCAGCATACAGAGGCATCCTGAAGGCAGTACGAGGCAACGTCTCGACCGAGCGTCAGGAAAAGGCCAAGATCAAGAGGCTGGCCCTCAGCCTCATCCTCATTGTGCTGCTCTGTTTCGCACCCTACCACGTCCTCCTGCTGTGGCGCAGCGTTCTCTTCATCAGTAACCCCTGTGACTGCAGAGTAGAGGAGAACCTGTTTGCTGCGTACCACGTGTCTCTCGCGCTCACCAGCCTCAACTGTGTAGCAGATCCAATCCTCTACTGCTTCGTCAATGAAGGAGCTCGCAATGATGTGGGCCGCGCCCTGGCCGCCCTGATGAGACTCTTCCATCGTGGAcaaaccacagaaacactgatgaGCGGCTCAATCACTGTCGAAACCCCCCTGGCCACCAAGAAGCCAGACCTGTACGGACAGGTCAAGACGAATTCCTATAAAAATGACATTGAGGTGCTGAAAGAGGAGTGCCTTCAGATGACCAAAATTAGTGTTAAAAATTGAACTTGTGAAGCGAGTGACACGCTTTCTAATGCAGCCACACTTTGGCTCACTATACGAGAACTTCAGGGACTGTGTGCCTCAGGATTTCCCCAAACACAGATTCCAACTCCTGTCACAGATCTGTCTTAAAGTGTTGGGAGTAAAACCTGCTCTGTATGTGAATGTTACTCCAGATGCCTTGTTGTTGGTGGTAATTTGAATCTGAAACTGTTGTCTCCCTCCAAAAAATGAGCTTATCTTACTTACTCTTGTTACTGTGATGATTCAGTTCTaagtgtgtttctttatttattttgtagctCATGCCACAGTGAagcttaaaacaaaaagaataagTAATGTAAAAAGGGCCCCATATGATGCAAGATTATCACGGCAGAGCTGTGTTAACTTTTATAATGAAGTGCAAATTTTTTAACTGGTCATACAAAACTTTTGTTACATTCTCTAAAACAGTTTATGCTGCAAACCTCACAATAGTGAACTGTCAAAACGATTTATTActgttttgtgtaaaatactgtaagatAACAACTATTGTGCTCAACATAAACCCCAatctttaaagtaaaatacatcCTTTAGAACAGGACAGGCTTCCGGCATAGCTTTTTCATCACACATAATAATCAGATTTATCTGCGAAGGTTGCAGGTTTTTATTCCAGCCAAGCAAAGTCACGTAGTAGTTGTGTTCCAGTACCCAGGCTGAGGCTGAGGTGGTACAAAGACATCTTTCAAATCTTTTAGAGCGATTAGAAAACTTCAAAATGAAAAACAGCACATGGGAAAATTGAGTGAAAATGGTGGAAAGCAAATCCTCTgtcattttgatttaaaatgtttcacaaCTGCTAGAATCATTTCTGTGAATCAATGAAAAAGCACACAGATTTCTTCCCAGTGTCACCATGTGAGGTTCAGACGTGATATCATCACAAAGAATGcccttttttttggtttgtatcCTTGGTTTGAAGCGAATATCGCATGGTGTTGGCTGTTCAGATTGAGCTTTATTGTTATGTATTGAATGTGTATCAGATTTGAATTTAAAGTGGTCTAAATAATGTCAGATTCAGTGTATTTGTGACGTTCACACtggcacacaaaaaaaaatacatctgggtaacttttacctgctgtttgAACATAGCTTTAGAGCAGGGAACTCTTCAGTTTTCAGTTCCAcatttttacaactttacaactgtaGTTACCAAACCAATCCTTTAGGGAACAAACTGGGGCAGATGCAGATCTGGAGCAGATCTTCACTCTCGCTCATCTCActacaataaggaaaatgtGGATCATCTGGGCATGCCTAATACctgctttagaaaaaaaatagccactatttaaatggtaaaattaaactaaacgtaaaggatttatttcatttgattCCCAATTGTTTGATACACATCCCACTTTTGTTAGGTGTTTTGGCTATGAGGGTTATAAGGGTTTAGATTTTTTACAGAGGTGAGTAAGTATGTTTatgagtaaataaaatgtagtaAGCTAAATCAGTGTCTTCATTGTGAACCAAGGACATGAACTATGGCCTAGGACTGCAGTTCTGTGGCACTGATGCAACTCTCAAGTTGTTGTAGAAGTTGTAAGACACCATGTTCCTATGAAACAAGGGGTAAAGGTTGATGGATGTCAGAGTGATCCGGTGGCgaaatgtgtgttttggggtTTGCAGAAACTGTTTTGGAAATGTGATGCTGTTTTAAGGACTGTGGAGAGCTGTAATAAAACAGCTTGAGTGAAAGGTTTGTTATTAACACGTATTCAACTACAAATGTCATCGTATTGTGTCTAGTTTGTCTGAGTGTTTTCACACCCACCCTCCAATGAAAATGTGTCCAAACGATAGATTTTGCACGTTTACTGTTGTTTGAGACCTCCACTGTAAATTGTGAATGTCTCTCTTCAGCTTTAGGTCTGCTACTCAACTCAACGTCTCATTTATgccaaactgaaataaataaattacatctgTCCAGACA

Function

symbol description
gpr4 Enables G protein-coupled receptor activity. Acts upstream of or within G protein-coupled receptor signaling pathway and response to acidic pH. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human GPR4 (G protein-coupled receptor 4).

NR:

description
PREDICTED: G-protein coupled receptor 4

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04312 GPR4; G protein-coupled receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236826.3 True 3854 mRNA 0.43 2 14540407 14577509

Neighbor

gene id symbol gene type direction distance location
LOC103039849 cd3eap coding downstream 19549 14517935 ~ 14520858 (-)
blmh blmh,LOC107743628 coding downstream 105025 14414254 ~ 14435382 (-)
LOC103037230 ssh2,LOC108440358 coding downstream 175938 14331805 ~ 14364469 (-)
git1 git1,LOC107685085,LOC107669736,LOC107548582,LOC105889552,LOC106580798 coding downstream 261117 14255315 ~ 14279290 (-)
LOC103035060 LOC108440363 coding downstream 371469 14138449 ~ 14168938 (-)
LOC103040481 eml2,LOC108277999,LOC107685092,LOC107669753 coding upstream 15516 14593025 ~ 14630713 (-)
LOC103041915 NA coding upstream 134809 14712318 ~ 14720394 (-)
LOC111192841 NA coding upstream 176401 14753910 ~ 14755778 (-)
LOC103043873 tmem87a,LOC108425916 coding upstream 245017 14822526 ~ 14837246 (-)
LOC103045693 LOC108425804,LOC107683437,LOC107588342,LOC107757408,LOC107672102,LOC105010786 coding upstream 303189 14880698 ~ 14884064 (-)
LOC111190767 NA non-coding downstream 26439 14437671 ~ 14513968 (-)
G3631 NA non-coding downstream 65231 14474085 ~ 14475176 (-)
LOC107197060 NA non-coding downstream 169323 14369213 ~ 14371084 (-)
G3621 NA non-coding downstream 177335 14362000 ~ 14363072 (-)
LOC111190296 NA non-coding downstream 221510 14281032 ~ 14318897 (-)
G3697 NA non-coding upstream 159321 14736830 ~ 14737158 (-)
G3699 NA non-coding upstream 172609 14750118 ~ 14753636 (-)
G3717 NA non-coding upstream 236911 14814420 ~ 14814633 (-)
G3745 LOC108425806,LOC107700232,LOC107548486,LOC107655908 non-coding upstream 262770 14840279 ~ 14845627 (-)
G3756 vezf1b,LOC108425912,LOC108278304,LOC108435808 non-coding upstream 323039 14900548 ~ 14982513 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 68655 14380755 ~ 14471752 (-)
G3612 NA other downstream 256182 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 407170 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 968035 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 1404766 13130212 ~ 13135641 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 1700496 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 2066983 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 3406376 17983885 ~ 17998749 (-)
G4621 NA other upstream 3452853 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 3619071 18196580 ~ 18226004 (-)

Expression


Co-expression Network