G98806


Basic Information

Item Value
gene id G98806
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 9790968 ~ 9792998 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU133212
CGTAGCTCTGAGAGCACGCGTAGCCTGATCTCGACTGAATCCCATCGAGACGATGGTCGCCAGATGCTCTTCAGAGATGCTTTCTGTGGGCGTGGTTccaggggcggagctacagccAGGCAACACCAGGGGAGCGGAGAAACTGGATCGTCCATGTGTCCCATCACCCAGTTCATGGCGGCGTCGATGCCAGTGTTGCCCGTGTAGTACACAGCCTTCCTGCAGGCCTCGAGAGGGAAGCCCATCTCACACAGCTGAGACACGGTGGAGTCGTCCAACACCGGAgctgagagacacacacaagcacacagatGTCTCCTGGAGCAAAACCTACATCTATATATGCTGTTTAAAAAATCAGGATAAATAGAAACTAATCAATGAGTACAAAAAATAGCTGAATGATCAGGGGGcaaaaaaagcatataaaatACAGGTGCTGCTTTGGTGTAGGTGTTGGTTGCCAAGGTgctggtaggtggttgctaaagtccTGCTATGAGATAGTTGTTCATTATTAagaagttgctaggtggttgcaaaggtgttgctttTATGAAGCTGCTGATAACTAAGgtgttgctaggtggttgcaaagatGTTGCTTTGATGAAGCTGTTGATAAATGAGCCGTTGCTAAGGTCACTATGGTGGCTTAAAAGTTGTTTGTGGAAAATAAGCCGATAAGCGGTTCCGAAAGTGTGGTTATGGTATTTATGTTGGTTACTAAGGGTGATTATCggcagttgctaatgtattggtttctaaggtgttgcaaggtggttgcatAGGTGAGGCTTTGATAAAGCTGCTGAGATGAAAGCAGTGCTAGGCACTTGAtaaggttgctatggtggtttAGAAGTTGATTGTGAAGATATtcctaaagtgttgctatggtgtttgtgTTGGTTACTAAGGCTGATGTTAGGCGCTTgctaatgtattaatttttaagGTGTTACTAAGTGGCTGCAAAGGTGTTAACTGtaactaaggtgttgctaggcagttgctaagttcaCTATGGTGGTATAGAAGTTAAAGATAAGTGAAGATAAGCTGATAAGATGTTCCTaaaatgttgctatggtatttgtgTTGGTTACTAAGGGTGATGCTTGGTGGCTACTAATGTATTGGTTgaaaaggtgttgctaggtgtttgcaaAGATGTTGCTTTGAAGAAGCTGTTGATAAATAAGGTGTTGcttggcagttgctaaggttgctatggtggtaTAGAAGTTGATTGTAAAAATAACCCGATAAGAGGTTCCTGaagggttgctatggtatttgtgTAGGTCACTAAGGGAGACGCTGGGCGTTTACTAAtgtgttgctaatgtgttggttaataaggtgttgctaggtgtttgtaAAGGTGTTGCTTTGATAaagcggttgctaggcagttgctaaggttgCTATGGTAGTTTAGGAGTTTATTGTGAAGGTACGCTGATAAAAGGTTCCTtaaggttgctatggtatttgtgTTGGTTACTAGGGGTgatgcttggtggttgctaatgtgttgctaattcactggttgataaggtgttgctaggtggttactaaggtgttgctaggcagataGTATAGTGTTGCTATGCGATAGAAGCCTTTATGGTATTAGTTGTCTTGCTGCTAGACTGCCTCCAAGAGATTggtatgtggttgctaagttgttgctatggtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133212 True 1706 lncRNA 0.43 3 9790968 9792998

Neighbor

gene id symbol gene type direction distance location
p3h3 p3h3 coding downstream 20912 9754233 ~ 9770056 (-)
LOC103042898 gnb3a,gnb3,LOC103042898,LOC108432288,LOC107672997,LOC102782474,LOC107549492 coding downstream 47050 9723291 ~ 9743918 (-)
LOC103044428 NA coding downstream 266158 9508056 ~ 9524810 (-)
LOC103022230 LOC107698273 coding downstream 630269 9140699 ~ 9160699 (-)
LOC103035192 NA coding downstream 797947 8948749 ~ 8993021 (-)
LOC103025791 LOC103025791 coding upstream 180283 9973281 ~ 9981178 (-)
LOC103040958 NA coding upstream 205657 9998655 ~ 10011711 (-)
LOC103025485 NA coding upstream 241749 10034747 ~ 10041021 (-)
LOC103039304 NA coding upstream 278722 10071720 ~ 10092767 (-)
LOC103025185 NA coding upstream 326934 10119932 ~ 10170053 (-)
G98805 NA non-coding downstream 223 9772415 ~ 9790745 (-)
G98783 NA non-coding downstream 39257 9751168 ~ 9751711 (-)
G98782 NA non-coding downstream 70986 9707666 ~ 9719982 (-)
G98751 NA non-coding downstream 102787 9593397 ~ 9688181 (-)
G98748 NA non-coding downstream 170427 9618529 ~ 9620541 (-)
G98873 NA non-coding upstream 41368 9834366 ~ 9835363 (-)
G98884 NA non-coding upstream 65725 9858723 ~ 9949160 (-)
G98904 NA non-coding upstream 201646 9994644 ~ 10003790 (-)
G98916 pafah1b3,LOC107755833,LOC108266541,LOC108432331,LOC107671211,LOC107578591,LOC107700190 non-coding upstream 250914 10043912 ~ 10045308 (-)
G98907 NA non-coding upstream 256064 10049062 ~ 10051793 (-)
LOC103043823 tpi1,tpi1b,LOC107700200 other downstream 212915 9560132 ~ 9578053 (-)
LOC103027931 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC107672985,LOC107598403 other downstream 253298 9529636 ~ 9537670 (-)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 other downstream 611600 9162401 ~ 9179368 (-)
LOC103034868 NA other downstream 876037 8901468 ~ 8914931 (-)
G98533 osbpl8,LOC107656451,LOC107658748 other downstream 995219 8775798 ~ 8795749 (-)
G98804 NA other upstream 6625 9799623 ~ 9800918 (-)
erf erf other upstream 710956 10503954 ~ 10580725 (-)
G99033 NA other upstream 810932 10603930 ~ 10606219 (-)
G99212 LOC108443719,LOC107595576,LOC107657689,LOC107699452,LOC107593646 other upstream 1462599 11255597 ~ 11260752 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_05057407_05062686 NA coding CI01000016 null 5057226 ~ 5062770 (-)