LOC103027825


Basic Information

Item Value
gene id LOC103027825
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8509797 ~ 8512298 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250833.3
AAAGCTAACATAGGTTCTTCGCTCACCATTTGTTCGTTTTCATGCTTGGTCTATTTTGGAGTGTCTTGCTCTCTtgactgtgtttatttacacgTTGTGAGATGGAGAGattctatttctttttcttgattCTGTTTCTCTGGGGGAATGCTAGTGGAATTGgagTCTGGGATGGACGACCTGCTCAGGACTGGAGACGTGGTGGGTTTAAAAGCCTTGAAGATCCACCTTCTCTTTTCCCCAGCCCATCTTCAACACCTCCTAAATGTGCTTATCATAGGAGACCAAGCCCTTTTAACAGTGTGTCTCCACATTTGAAGCCTCAAGGCCCAACCTACGGCCCTGGATACTGGTCTGGGCAATTCAATAAGCCTGTGCCTCAATCACAGGGAGACTCCCTGTATCAGCAAGACAACTTTGGGGTTATTGACTCTTCTAAAAGACTGAGCAGTCAAACATCACCTCAGAACCTCCAGACCCAGTATGCCCCTGCATCAAATCCTGTGGCCACATCCCAGAGTTCAGCAAGTGCATTAAAGTCACCACAACAAGGTAGCTATGGTGTTTCATCTAGTTGGCATGCTTTACAGGGGCAACGCATTCCATTAGCTTCTCATTCTAGACTCCAAACCCAAGCATTAAGGCTTTTGCCCCCATCCCAAAGTTTAGCATGTGCGCCAAAGCTGCCACCACAGCAAGGCAGCTATGGTATTCAGTCTGGAAACTTTGCTTTATGGAGGCAGACCAGCCCATCAGCTTCTGGTTCTACACTCCAGACCCAGACATCAAGCCTTGCGACCCCATCCCAGAGCTCGGAAAGTACATGGCTAGCTTCACAGAGGCAAAGAATCCCATCTTTTCCTCAGTCCATTTTTGAGACATCAAGCCTTGTGGCCCCATCCCAGAGTTCAGCAAGTGCGTCTGATTCATCACGGCAAGGCAGCTATGGTGTTGCATCTAGTTTTTATACTTCACATGGGCAGAGCATCTCATCAGATACTCTCCCTACGCTCGAGAACCAGGCACCAAGGCCAGTGACTTTGTCCCAGATTTTAGCAAGTGCTTCTAAGCCACCACAGCAAGGGAACTATGTTGTTCCGTCTGGTTGGTATGATGCTTCCATGGAACAGAGCAATCCATCAGCTAGTCAGTTGAGCCAGTATGCTCCAGCCTTTAAAACCCAGTCAAGCAGGCTTATGCCTCCAGCTTCCAAGGGTTTAGCAAATCTGTTTCCTTCTATTTCTCAAAGCTCACCTGACCAGACTGTCCCTGTATTTTCGGCTCAGCTCCAGACTGCTGAGACCAGAAATGCAGCAGAAATTGGTCCCCCTAGCTTGTATACCCCTTTGCAGGGCCAGGATGTTCAGGCATCTTGGTTTGATGCTCTGAACCAGGTCCCTGCTGTGCAAACCCAGTCGTCATATAAGCCAGTGTTCCAATCACAGGGGTTAGAGAATCGATACAACTTTCCACCTCAAACTTGGGTCAGGGCTGACCCTTCAGGACTTGCTCAGTGGTATAGAGTGACTAATGCTGGACTTGAGCCTGTGCAGACCATTGAACCATTGTTTCCATTCCAGAGTTTAGAGGTTCTCTATAACCAGGCAGCTTTAGGTAACACTCCACCTGTATCTCAAAGCCCAAACAGTCCAGTATCTTTTGGCTTTGCCTCTCAAAACCGAGGGACTCAAACTTCAGCTCAAGCTTTATCCCCACTAAATcccacaatgctgcaagtcggTCAGTCCCCATGGCCATAGGTTTAACGACTTAACCCCAAAGTGTCCTAGTCCTTTGGCCAAACTTCTGCTGGACGCCAATTGAGAGATCCTGCGCCAGCTGCAGGTGCTCAACTATTCAGCTGCAAGCACCTGGCGGACTCCCCAGGCAGTTACCACCCTGTGCTTCAAAGTGGTGCACCCTAGAAGGGATTCTCTAACCAGTACAGCCCAGTAAGTAATGTTCCGGCCCCCGTGTCTGCTGCAGGAACTGCGAGCAACAGCAACTTTGGACTTGCGCAGAGCCACAGAGAAGCCAGGCACCAGGGGCCTCTGCCCAACAATCGATTGGAGACTATTCCCTAGCCCGGGAAATGTTTCAAAAACCAGTGGCACCTCAACTTGAGATGCGTTTACCAGCCTTCTGAAGTTGAGAGCTTGGGCTCAGTCAGTATTAAATGGTTTTCTATGCATGcgttttgtatgtatttttccaTGTATTTGTGAATCCTGGATCTTTCATGTTGCACGAGTGGTAAAGCTGTCTTGcctgtatattaatattgagAATAAAGGACCGTGTGACATACTTTA
>XM_022674271.1
AAAGCTAACATAGGTTCTTCGCTCACCATTTGTTCGTTTTCATGCTTGGTCTATTTTGGAGTGTCTTGCTCTCTtgactgtgtttatttacacgTTGTGAGATGGAGAGattctatttctttttcttgattCTGTTTCTCTGGGGGAATGCTAGTGGAATTGgagATGGACGACCTGCTCAGGACTGGAGACGTGGTGGGTTTAAAAGCCTTGAAGATCCACCTTCTCTTTTCCCCAGCCCATCTTCAACACCTCCTAAATGTGCTTATCATAGGAGACCAAGCCCTTTTAACAGTGTGTCTCCACATTTGAAGCCTCAAGGCCCAACCTACGGCCCTGGATACTGGTCTGGGCAATTCAATAAGCCTGTGCCTCAATCACAGGGAGACTCCCTGTATCAGCAAGACAACTTTGGGGTTATTGACTCTTCTAAAAGACTGAGCAGTCAAACATCACCTCAGAACCTCCAGACCCAGTATGCCCCTGCATCAAATCCTGTGGCCACATCCCAGAGTTCAGCAAGTGCATTAAAGTCACCACAACAAGGTAGCTATGGTGTTTCATCTAGTTGGCATGCTTTACAGGGGCAACGCATTCCATTAGCTTCTCATTCTAGACTCCAAACCCAAGCATTAAGGCTTTTGCCCCCATCCCAAAGTTTAGCATGTGCGCCAAAGCTGCCACCACAGCAAGGCAGCTATGGTATTCAGTCTGGAAACTTTGCTTTATGGAGGCAGACCAGCCCATCAGCTTCTGGTTCTACACTCCAGACCCAGACATCAAGCCTTGCGACCCCATCCCAGAGCTCGGAAAGTACATGGCTAGCTTCACAGAGGCAAAGAATCCCATCTTTTCCTCAGTCCATTTTTGAGACATCAAGCCTTGTGGCCCCATCCCAGAGTTCAGCAAGTGCGTCTGATTCATCACGGCAAGGCAGCTATGGTGTTGCATCTAGTTTTTATACTTCACATGGGCAGAGCATCTCATCAGATACTCTCCCTACGCTCGAGAACCAGGCACCAAGGCCAGTGACTTTGTCCCAGATTTTAGCAAGTGCTTCTAAGCCACCACAGCAAGGGAACTATGTTGTTCCGTCTGGTTGGTATGATGCTTCCATGGAACAGAGCAATCCATCAGCTAGTCAGTTGAGCCAGTATGCTCCAGCCTTTAAAACCCAGTCAAGCAGGCTTATGCCTCCAGCTTCCAAGGGTTTAGCAAATCTGTTTCCTTCTATTTCTCAAAGCTCACCTGACCAGACTGTCCCTGTATTTTCGGCTCAGCTCCAGACTGCTGAGACCAGAAATGCAGCAGAAATTGGTCCCCCTAGCTTGTATACCCCTTTGCAGGGCCAGGATGTTCAGGCATCTTGGTTTGATGCTCTGAACCAGGTCCCTGCTGTGCAAACCCAGTCGTCATATAAGCCAGTGTTCCAATCACAGGGGTTAGAGAATCGATACAACTTTCCACCTCAAACTTGGGTCAGGGCTGACCCTTCAGGACTTGCTCAGTGGTATAGAGTGACTAATGCTGGACTTGAGCCTGTGCAGACCATTGAACCATTGTTTCCATTCCAGAGTTTAGAGGTTCTCTATAACCAGGCAGCTTTAGGTAACACTCCACCTGTATCTCAAAGCCCAAACAGTCCAGTATCTTTTGGCTTTGCCTCTCAAAACCGAGGGACTCAAACTTCAGCTCAAGCTTTATCCCCACTAAATcccacaatgctgcaagtcggTCAGTCCCCATGGCCATAGGTTTAACGACTTAACCCCAAAGTGTCCTAGTCCTTTGGCCAAACTTCTGCTGGACGCCAATTGAGAGATCCTGCGCCAGCTGCAGGTGCTCAACTATTCAGCTGCAAGCACCTGGCGGACTCCCCAGGCAGTTACCACCCTGTGCTTCAAAGTGGTGCACCCTAGAAGGGATTCTCTAACCAGTACAGCCCAGTAAGTAATGTTCCGGCCCCCGTGTCTGCTGCAGGAACTGCGAGCAACAGCAACTTTGGACTTGCGCAGAGCCACAGAGAAGCCAGGCACCAGGGGCCTCTGCCCAACAATCGATTGGAGACTATTCCCTAGCCCGGGAAATGTTTCAAAAACCAGTGGCACCTCAACTTGAGATGCGTTTACCAGCCTTCTGAAGTTGAGAGCTTGGGCTCAGTCAGTATTAAATGGTTTTCTATGCATGcgttttgtatgtatttttccaTGTATTTGTGAATCCTGGATCTTTCATGTTGCACGAGTGGTAAAGCTGTCTTGcctgtatattaatattgagAATAAAGGACCGTGTGACATACTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250833.3 True 2312 mRNA 0.48 3 8509797 8512298
XM_022674271.1 False 2306 mRNA 0.48 3 8509797 8512298

Neighbor

gene id symbol gene type direction distance location
fam84b fam84b coding downstream 100548 8406971 ~ 8409249 (-)
LOC103047384 NA coding downstream 239806 8264525 ~ 8269991 (-)
LOC107197658 NA coding downstream 249424 8252651 ~ 8260373 (-)
LOC111193440 NA coding downstream 262270 8242053 ~ 8247527 (-)
LOC111193439 LOC108429926 coding downstream 269364 8234533 ~ 8240433 (-)
nsmce2 nsmce2 coding upstream 90810 8603108 ~ 8606859 (-)
zhx2 zhx2 coding upstream 112004 8624302 ~ 8647582 (-)
LOC103029934 LOC108443716,LOC106606150 coding upstream 200574 8712872 ~ 8721805 (-)
glipr1 NA coding upstream 427829 8940127 ~ 8945629 (-)
LOC103035192 NA coding upstream 436451 8948749 ~ 8993021 (-)
G98391 NA non-coding downstream 4308 8503476 ~ 8505489 (-)
G98385 NA non-coding downstream 15146 8494267 ~ 8494651 (-)
LOC111193401 NA non-coding downstream 70112 8439030 ~ 8439685 (-)
G98363 NA non-coding downstream 123067 8386439 ~ 8386730 (-)
G98362 NA non-coding downstream 134946 8374642 ~ 8374851 (-)
G98407 NA non-coding upstream 31835 8544133 ~ 8544349 (-)
G98408 NA non-coding upstream 35621 8547919 ~ 8548227 (-)
G98410 NA non-coding upstream 63976 8576274 ~ 8576480 (-)
G98519 NA non-coding upstream 210761 8723059 ~ 8723320 (-)
G98520 NA non-coding upstream 211875 8724173 ~ 8724437 (-)
prelid3a prelid3a,LOC107715058 other downstream 33885 8467176 ~ 8475912 (-)
LOC103044427 NA other downstream 701655 7781480 ~ 7808142 (-)
LOC103043934 LOC103043934,LOC108429921 other downstream 730513 7769129 ~ 7779284 (-)
LOC111193437 NA other downstream 800292 7684766 ~ 7709505 (-)
LOC103044954 LOC103044954,LOC108429942,LOC100705775,LOC107699547,LOC107589412,LOC107582081,LOC103388254,LOC107599504,LOC103356523,LOC101077558 other downstream 1658959 6843486 ~ 6850838 (-)
G98533 osbpl8,LOC107656451,LOC107658748 other upstream 263500 8775798 ~ 8795749 (-)
LOC103034868 NA other upstream 389170 8901468 ~ 8914931 (-)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 other upstream 650103 9162401 ~ 9179368 (-)
LOC103027931 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC107672985,LOC107598403 other upstream 1017338 9529636 ~ 9537670 (-)
LOC103043823 tpi1,tpi1b,LOC107700200 other upstream 1047834 9560132 ~ 9578053 (-)

Expression


Co-expression Network