LOC111193439 (LOC108429926)


Basic Information

Item Value
gene id LOC111193439
gene name LOC108429926
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8234533 ~ 8240433 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674263.1
CAAGTGCTGTGTTCAACACAGTCGTACATATATACACCCAGTGTAGCCCATGGTCTATCTTCCAGTTCTATTTCAGTTTGGTCTTTCTCCAGTAGTAATGAGGTGTATTGTAGCGGTGTTGCTGCTGGTGGCTGTGGCATGCAGCAGAGCTGATGATGATAAGATCATCGGCGGGTACGAGTGTCGACCTCACTCTCAGCCCTGGCAGATTTATCTAACCTACGATGATGGTGAGCGCTGGTGTGGTGCTTCTTTGATCAATGAGAGATGGGCAGTGTCGGCAGCGCACTGTTACGTCCCggcCCATCGTCTCGCTCTGCACCTGGGAGAGCACCACATCTTCGAAGACGAGGGCACAGAGCAGAGGATCTGGGCAGAGAAGGTCATACCCTATCCCGCCTACGACGATTACACCTACGACCACGACTTCATGCTGATCAAGCTGAGCCAGCCTGCTGTTTTCAATCAGTACGTGCAGCCGATTCCTCTGGCCACCACATGTGCAAGAGATGGGGAGCAGTGCTTGGTGTCTGGATGGGGTAATCAGATCACCACTGGAGTGAACTATGCGTCTGTACTGCAGTGCCTGGATTTACCCGTGGTCTCACGCTCAGACTGTGAAGCTGCTTATCCAAACCAGATCACTAAGAACATGTTCTGCGCTGGATTCCTGGAGGGAGGCAAAGATTCAtgccagGGAGACTCCGGTGGTCCTCTGGTGTGTAACGGGCAGCTGCAGGGCGTCGTGTCCTGGGGGTATTACTGTGCTGCTCCTGGTTATCCTGGTGTTTATGCTGAAGTCTGTCGCTACACTGACTGGATCAAAAACACCATTGCCAACAATTAAGAGGGAAAAAAATTGTCTTGAAGACAAACAGCAAATCTTTCAGTATGTGTACAATATCTTCTTCAGTTTGGACctcaaataaatgtatacaatgAAGCAAAA

Function

NR:

description
PREDICTED: trypsin-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674263.1 True 949 mRNA 0.50 5 8234533 8240433

Neighbor

gene id symbol gene type direction distance location
has1 has1,LOC107723422,LOC107714739,LOC107657615,LOC107699477 coding downstream 131523 8093463 ~ 8103010 (-)
LOC103046986 NA coding downstream 243043 7972577 ~ 7991490 (-)
kcnn4 kcnn4,LOC107699521,LOC107595330,LOC107714738,LOC107570842,LOC107723512 coding downstream 265662 7917463 ~ 7968871 (-)
LOC103045648 NA coding downstream 344238 7884247 ~ 7890295 (-)
LOC103046166 NA coding downstream 392451 7833619 ~ 7842082 (-)
LOC111193440 NA coding upstream 1620 8242053 ~ 8247527 (-)
LOC107197658 NA coding upstream 12218 8252651 ~ 8260373 (-)
LOC103047384 NA coding upstream 24092 8264525 ~ 8269991 (-)
fam84b fam84b coding upstream 166538 8406971 ~ 8409249 (-)
LOC103027825 NA coding upstream 269364 8509797 ~ 8512298 (-)
G98325 NA non-coding downstream 12735 8218680 ~ 8221798 (-)
G98312 NA non-coding downstream 36739 8187644 ~ 8197794 (-)
G98217 NA non-coding downstream 126520 8107758 ~ 8108013 (-)
G98208 NA non-coding downstream 199068 8033091 ~ 8035465 (-)
G98174 NA non-coding downstream 277074 7957110 ~ 7957459 (-)
G98335 NA non-coding upstream 36663 8277096 ~ 8277791 (-)
G98358 NA non-coding upstream 107852 8348285 ~ 8356069 (-)
G98362 NA non-coding upstream 134209 8374642 ~ 8374851 (-)
G98363 NA non-coding upstream 146006 8386439 ~ 8386730 (-)
LOC111193401 NA non-coding upstream 198597 8439030 ~ 8439685 (-)
LOC103044427 NA other downstream 426391 7781480 ~ 7808142 (-)
LOC103043934 LOC103043934,LOC108429921 other downstream 455249 7769129 ~ 7779284 (-)
LOC111193437 NA other downstream 525028 7684766 ~ 7709505 (-)
LOC103044954 LOC103044954,LOC108429942,LOC100705775,LOC107699547,LOC107589412,LOC107582081,LOC103388254,LOC107599504,LOC103356523,LOC101077558 other downstream 1383695 6843486 ~ 6850838 (-)
G97793 LOC103046199 other downstream 2211650 6015843 ~ 6022883 (-)
prelid3a prelid3a,LOC107715058 other upstream 226743 8467176 ~ 8475912 (-)
G98533 osbpl8,LOC107656451,LOC107658748 other upstream 535365 8775798 ~ 8795749 (-)
LOC103034868 NA other upstream 661035 8901468 ~ 8914931 (-)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 other upstream 921968 9162401 ~ 9179368 (-)
LOC103027931 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC107672985,LOC107598403 other upstream 1289203 9529636 ~ 9537670 (-)

Expression


Co-expression Network