G134516 (LOC103033727,LOC108436326,LOC108276432)


Basic Information

Item Value
gene id G134516
gene name LOC103033727,LOC108436326,LOC108276432
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24817171 ~ 24820589 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU181960
GCCACGTAACTAAACAGATAAAAGGATCAGCTAGTACAGAAAAAATTCTAGACTACACTGTAATTAACGTGTAAATATATGCATCTATAAATAGatttactgtgtgtgagtgtgtatatatatttatatacccagacaaaaaaaaagacagtttgATGTTCCTTTGGGTATCTCTACAGTTGTATACTCAGATCGTACAggcacacactgcttttgggatTGAAGGCAtccttcagttaaaaaaaaaatcccaatttCTATAAAGCTATTGTCAATAACCTGTAAAGATGCCCTTTTGATTCTGTTATGACCACAATAAACTGAAATTAGCctttaaataaatcagtgtctctAAGTTCTTTGGAAAGGGTCGGCAGCGCTCCGGTCTTAGTGTTTTCCCCACCAGACTGAATATCCTTTCCACTGTTGTTGATGTGGCTGGTACTGTGAACACTTTCTTAGCCACTTGTGAAAGAAGAGGGAAGTCAATGGACTTGCGCTTCCAATACTGCAGCGGGTCCTCGTCTGTAGGCTCCTCGAGGAGGTAAGCGGACAGCTCCTGCTCTGTGCTCTTGGCCTGAGTGGTCGGCCTTTGCTTGATGAAGGAGAACAGCCTGCTGCGTTTGGATGGTGATGGCTGAGCATCCAAACTAGCCTCTGGTGGACTTACAGCCTGGGTGTGCTTTCCCACCTCCTCCAGCAGAACCTGCTTGTGCCACTCGCGGTCGCTGCTCCAGGAAAGCTTGAACTGCGGGTCCAGGGTGGTCGCTGTCACGTACAGAGGATCCTCCAGAATGCCTGCCAGCCTCCGGTCCAGCGCCTGAGACAATCCTGCTACAATTCCAGTGCACTGGTGTGTGACTACCTCTGCCAAATGCTTGCGGAGCCCAAGCACACTGGGAAGAGCAAGGCTGATGGATACATGCTTGTCTCCCTGGACCATGTCTGTGGCCTCCTCAAAAGGCTCCAGGACCTCGACCAGCTCTCGCAGCATGGTTTTCTCAACATTGTTGAGGGTCAGATCATTTCTGTCCACTATGTCTTCTAAGAAATCCACCGACTCAAGCATCTGTCGCATTGTCTTAAGCTGGGCATTCCAGTGTCGGTCTGAAGCCAGAGGGCCTTGTCCGTTTACGTGGCTGAACACTTGGGCGAGTTTTTCAGGAGTCACTGTAGCAATGATGTAGTTGTAGAAGCACGCTGCTTTAGTGAGAGTTATTGATAACTGTGGGGAGGAACGGATTCCTTCACGAACGCAATGACTCAGAGAGCGTGCAAAACAGTCTATTCTACACTGACCCAGGTACTGGTTCACAGAGTTGTCCTCTTCTTCTCCACTTACAGCTTCTGCACACATCCCTGTGCTGGTCTCTTCATCACTACTATCctcatcttcctcatcttccACATCCCCATTACCATGGAGGTAGAAACCAGGCAGGCGGAAGGCAGACCGGCTTTCACAGGCAGAGGGGTCAAGGACTATGCGGAACACCTTACCTGAGATGCCATGAGCATGAGAGATTTCCTCAAAGTCAGCGAGCATGCGCTGCGTGTCAGTTTGATTTGACAGAGGTAAACAAGCCAATAGTACAGATTTAATCTGCCAGTCTGCGCTTATGAAATGGCATGTCACTCCCATGTAGCCAGAGCTAGTGCCCACAGACACAGCATTACTTCTCCACAGGTCCAGGGTTACGCTGCAGGACTCTGCTCCTGACAGGGCCAGCTTGGTCGAGACTTGTACCTGGTAGGCGTAGGCTGGCAggagctgctgctggatgtAATGACTCGGTTCTGGGATATAACGGGGCTCGAGGAGCTGCAGCAGCTCCCGAAACCCCTCGTTCTGTACAATCTGTACAGGCTGCAGGTCTCGGATGATCATCTTGGCGATGGTTTCGGAAATGAGTGACTGCCGTGGATCGGTGCGGTCAAACTTGCCTGAGCCTGATCCGCTCTGAGTAGCCGTTCGGTTTGTTTCTCTGACGGGCGCGTAGGTCTGCACCGCCCCTGAAGCATAAGCCTCTCTTTTCACATCTTTCTTCCTCAGAAACTCATCATACATCGCTTGATGTTTGCGCTTTAAATGTGTAACGAAGTTAGAGGTAACAGTCCGCTTGGCCTGTATCCGTGTCCCACAAGCTTTGCAGTTCGATTcgatttttccattttccccC

Function

NR:

description
zinc finger BED domain-containing protein 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181960 True 2180 lncRNA 0.49 2 24817171 24820589

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa_3 NA coding downstream 11528 24805571 ~ 24805643 (-)
pard6b pard6b,LOC108436329,LOC107560924,LOC107562464,LOC107712746,LOC107657018,LOC107737628 coding downstream 22891 24751907 ~ 24794280 (-)
arfgef2 arfgef2,LOC108436330,LOC107671990,LOC107737629,LOC107562465 coding downstream 69059 24705747 ~ 24748112 (-)
bcl2l1 bcl2l1 coding downstream 113219 24662615 ~ 24703952 (-)
fam110a fam110a coding downstream 211825 24571423 ~ 24605346 (-)
oard1 oard1 coding upstream 10783 24831372 ~ 24836141 (-)
guca1b guca1b,LOC107562461,LOC107657012,LOC107560929 coding upstream 21263 24841852 ~ 24846483 (-)
klhdc8b klhdc8b,LOC107712738,LOC106572099 coding upstream 33612 24854201 ~ 25008250 (-)
LOC103032451 LOC108436322 coding upstream 203278 25023867 ~ 25043285 (-)
LOC103031928 asb14b,LOC108436293,LOC108276494,LOC107560887,LOC107671999,LOC107737718 coding upstream 223861 25044450 ~ 25053042 (-)
G134500 NA non-coding downstream 143382 24672405 ~ 24673789 (-)
G134497 NA non-coding downstream 160599 24654166 ~ 24656572 (-)
G134496 NA non-coding downstream 163080 24653384 ~ 24654091 (-)
G134414 NA non-coding downstream 274319 24542473 ~ 24542852 (-)
G134413 NA non-coding downstream 291599 24525079 ~ 24525572 (-)
G134520 NA non-coding upstream 8716 24829305 ~ 24829884 (-)
G134535 NA non-coding upstream 201643 25022232 ~ 25022463 (-)
G134748 NA non-coding upstream 370375 25190964 ~ 25191789 (-)
LOC103026004 NA non-coding upstream 463854 25284443 ~ 25303167 (-)
G134775 NA non-coding upstream 608623 25429212 ~ 25429657 (-)
trnah-gug_15 NA other downstream 6669 24810431 ~ 24810502 (-)
ebp ebp,LOC107672060,LOC107712744 other downstream 7836 24806913 ~ 24809335 (-)
LOC111194123 NA other downstream 185314 24621617 ~ 24631857 (-)
trpc4ap trpc4ap,trpc4apb,LOC107741324,LOC107737634,LOC107562468,LOC107672047,LOC107560917 other downstream 322746 24483965 ~ 24494425 (-)
LOC111194023 NA other downstream 383700 24431159 ~ 24433471 (-)
G134867 si:rp71-17i16.4,tnnc2,LOC103044939,LOC108434838,LOC107737591,LOC107568845,LOC107672054,LOC101472191 other upstream 971298 25791887 ~ 25798373 (-)
taf13 taf13,LOC107671955 other upstream 983488 25804077 ~ 25805824 (-)
LOC111194124 NA other upstream 1093812 25914401 ~ 25927945 (-)
G134931 uba1,LOC107737583,LOC107672015,LOC107699604 other upstream 1166602 25987191 ~ 26004934 (-)
G135102 emc1 other upstream 1759587 26580176 ~ 26581742 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_05581818_05584137 NA coding CI01000001 null 5581818 ~ 5584621 (+)