tamm41 (tamm41)


Basic Information

Item Value
gene id tamm41
gene name tamm41
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14610951 ~ 14621412 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248303.3
AATATAGATCATAAACAGTGTACTGGAGACTGCTTCAGTTTATGCTGCCAGCTGTTTCATTTCTAACTGTATGAATTCTATAAATATTAAagcaaaatatatacattttcaggCTGTATTTATTAAACGCGACAGGTTATTTAATGTTGTAGCTTTTCCCGTTCAGTTATAGCGTTTGGCTTAGCTTAGCAGCTAACTAGCAGAGTGCAGCCCTGCAGCACTagtagttagcttagcttagtttagctagAGCTGGCTGTGGCTGTTAGTAGTGGATTATGAGCAGTATTCAGGATTTAGTAAGTTTATTTAGGAGGATTTCGTCCTGAAATGACGCTCCCAGCTCTGCAGAACACCAGTGTTTTCTTCAGGAGGATCCTATCCCAGTTTCCTCAGGATATCAGCTTAGCTTTTGCCTATGGATCTGGAGTGTTTAAACAGGCTGGGACCAGTCAAGGTCAGATGGGGaaaAACATGCTGGATTTCGTATTCGCCGTGGAGGACCCCATCACTTGGCACACAATGAACCTGATCGAGAACAAGAAGCACTACTCCATCTTAAAATACTTTGGCCCTAAGCAGATCAGCAGAATCCAGAACGACTACGGAGCTGGAGTCTACTACAACACCCTGGTGCCCTCAGATGACCGGCTCATCAAGTATGGGGTCATCAGCACTGACGTATTGATTGATGATCTACTTCACTGGAAAACTATGTACATTGCGGGAAGGCTACACAAACCAGTGCGGATTCTGCTGCAGAGTGAGAACGGGAAGCTCCGGGCTGCTCTGGTGGCGAATCTGAAGAGTGCAATAAACGCCTCCTTCCTGATGCTTCCAGAGAGCTTCTCTGAGGAGGACCTGTTCCTGCAGATCACTGGCCTCTCATACTCAGGTGATTTCAGGATGGTGATCGGTGAGGATAAATCCAAAATATCCAACATCGTGAAGGACAACATGCAGCACTTCCGAATCTTATATAACAACATTCTGCAGGACTGTCCTCAAGTGGTGTACAAACCCCAGCAGGGGAGACTGGAGGTGGACAAAAGCCCTGAAGGACAGTTTACCCAGCTGATGGCTCTGCCGAGGACCCTACAGCAGCAGATCACTCGGATAGTGGATCCACCTGGGAAGAATCGTGATGTGGAGGAGATTCTGCTGCAGGTGGCTCAGGACCCGGACTGTGGACTGGTAGTACAGCAAGGCATTTACTCAATAGTGAAATCATCcagcattacacaaagtgctaaAGGAATTATTACAGCAGGATTGATGAAATCGGTGTCGTATAGTGCAAAGAAGCTGCGGAAAATGTGGAAAGGCTGGAGAAGGAAGACGCCGTGACGACTTCTCACATTTGTAGCTCCCAGTAAATCATGTTCCTCTGACTGACACTGACTTTTACGTTTTTAATTTACCAGCTTGTCCTTGTTACATACTTACATATTACAAAATGTGTATGTTTTGTTATGATGCCATACAGTGACCTCTAAATTTAATTCCATTCAAAACAGACTCATATGAGctaagtaatatttattttttagttaaaatattttttttttttatatattttgaagAATTCCATATTGACCGAAGTTGGGCATGTTTCAGATGATCTGCACTTGCCTGTGGGGGATTTACTGATTTGCTGTTGAACATCACAGTGTTGTATAATTAAACTGGACTGACAGtgagaatgattttttttttaaataaacaaattgtgtaaaaaaaaaaaaaa

Function

symbol description
tamm41 Predicted to enable phosphatidate cytidylyltransferase activity. Predicted to be involved in CDP-diacylglycerol biosynthetic process and cardiolipin biosynthetic process. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in mitochondrial inner membrane. Predicted to be extrinsic component of mitochondrial inner membrane. Predicted to be active in mitochondrion. Is expressed in heart and heart tube. Orthologous to human TAMM41 (TAM41 mitochondrial translocator assembly and maintenance homolog).

NR:

description
LOW QUALITY PROTEIN: phosphatidate cytidylyltransferase, mitochondrial

GO:

id name namespace
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0031314 extrinsic component of mitochondrial inner membrane cellular_component

KEGG:

id description
K17807 TAM41, MMP37; mitochondrial translocator assembly and maintenance protein 41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248303.3 True 1747 mRNA 0.43 8 14610951 14621412

Neighbor

gene id symbol gene type direction distance location
vgll4 vgll4,LOC107697562,LOC107750033 coding downstream 1327 14549146 ~ 14609624 (-)
LOC111195442 NA coding downstream 355479 14251464 ~ 14255472 (-)
LOC103026383 NA coding downstream 1038340 13557022 ~ 13572611 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding downstream 1077329 13493576 ~ 13533622 (-)
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding downstream 1145546 13459735 ~ 13465405 (-)
prph prph coding upstream 3410 14624822 ~ 14638350 (-)
LOC111195382 tuba1c,LOC108431527,LOC105935211,LOC102211704 coding upstream 26394 14647806 ~ 14654334 (-)
LOC103046666 Tuba1a,tuba1a,LOC108255233,LOC108275946,LOC106934846 coding upstream 34833 14656245 ~ 14659947 (-)
suox suox coding upstream 46595 14668007 ~ 14677478 (-)
mcrs1 mcrs1,LOC107696040 coding upstream 58515 14679927 ~ 14694115 (-)
G189808 NA non-coding downstream 14377 14594996 ~ 14596574 (-)
G189803 NA non-coding downstream 64306 14545906 ~ 14546645 (-)
G189789 NA non-coding downstream 187281 14420713 ~ 14423670 (-)
G189779 NA non-coding downstream 285654 14324804 ~ 14325297 (-)
G189778 NA non-coding downstream 299909 14310305 ~ 14311042 (-)
G189814 inpp1,LOC107683640,LOC107730897,LOC107562242,LOC107737355 non-coding upstream 86323 14707735 ~ 14709526 (-)
G189821 inpp1 non-coding upstream 91471 14712883 ~ 14713733 (-)
G189823 NA non-coding upstream 96024 14717436 ~ 14799628 (-)
G189834 NA non-coding upstream 138376 14759788 ~ 14760374 (-)
G189835 cnpy2,LOC103039390,LOC108431501,LOC107572063 non-coding upstream 159136 14780548 ~ 14782900 (-)
tsen2 NA other downstream 1534209 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 1896919 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 1991385 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2215419 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2432341 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 697231 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 787795 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1724289 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1948211 16569623 ~ 16599317 (-)
cass4 NA other upstream 2212438 16833850 ~ 16869461 (-)

Expression


Co-expression Network