mcrs1 (mcrs1,LOC107696040)


Basic Information

Item Value
gene id mcrs1
gene name mcrs1,LOC107696040
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14679927 ~ 14694115 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682431.1
CCGGCCGAAGCGACTCCTTTACCCGGAAGATTTCCACTGTGCTGCTCCGCAGTGTAGCCGAATCTGTTAGCTGacagataaatattaatgtagatttaatatatatatatatattttttttccggTCTGTTTTAAAGGACTGGAGTTCGGGCTGGAGTAGCGCGTGTTCAGACTGAGATTTGACTGGCCCTCTGTCCTGTACTGGCTGAAAATCTGCTTTGTGGAAATAATGTTTGATTGATTACAGAACCAGACCCAGTCATGGACAAAGATGTTAAGCCGGATATTACTGCTGCCATGGTTGGAGGGCCCACTATTGGTAGTCTGGCAGCGCAGAACAGATCTGAAGATGAGGAGTCTATGGGAGTGAAGGATGTAAAACGGGCGGCACCTCAGGCGTTCAGTGGGGGTGGGCTGGTTCCCAAACGACGCAGCTCCTCCAGatcaatcaagaggaagaagttTGATGATGAGCTGGTCGAGAGCAGCCTGGCTAAATCTTCTACAAGAGTGAAGGGACAGCCCGTTATAGAGCCAATCAGATGCCCTGGGACTGAGCCATCGTCCAGTGAGAAAAAGAAgATTTCAAAGTCCACAACATCATTAACTCCCCCTCTTACTATGGTGATCGCCCCGTCTCCAATTACCAAACGAGTGAAGAAGAGTAAGCAGCCACTTCAGATCACTAAAGACCTCGGCCGCTGGAAACCCACAGATGACCTGCTGCTCATTAATGCAGTTCTGCAGACTACTGACCTCACGTCTGTTCACCTGGGAGTAAAGTTCAGCTGTCGCTTCACACTCCGAGAGATTCAGGAGAGATGGTATGCTTTACTCTACGACCCTGTCATATCAAAgCTGGCTTGGCAGGCAATGAGACAGCTCCACCCAGAGGCTATCGCTGCAATCCAGAGCAAAGCTCTGTTCAGTCAGGCTGAAGAGGCTCTGCTGTCTAAGATTAGCTCAAACAGTCAGCCTAAACTGGAGGTGTTCCAGGACTTGCTAAACAAGAACCCCAGTGTGTTCTACCCATCCCGTACCGCCAAGAGTTTACTAGTGCACTGGCAGCTGCTTAAACAGTACTACCTGCTGGACGACCAGAGTGtTCAACCTCTTCCCAAAGCAGACCAGGTTCTTAACTTCTCGGATGCTGAGCAGATGGTTGATGATACCAAGCTAAAAGAAAGCAGAGACGAGGTGTTGGAGCATGAGCTGATGGTTGCGGACCGGCACCAGAAGAGGGAGATAAAGCAGCTGGAACAGGAGCTTCCACGCTGGCAAGTCTTGGTAGACAGCATCACTGGTATGAACTCCCCTGATTTTGATAACCAGACCCTGGCAGCATTAAGAGGGCGCATGGTCCGATACCTGATGCGATCTCGAGAGATCACCCTTGGCCGTGCTACCAAGGACAAACAGATAGATGTGGATCTGTCTTTAGAGGGACCAGCATGGAAGATTTCCAGACAGCAGGGGGTCATCAAACTCAAAAACAATGGCGATTTCTTCATTGCAAATGAAGGCCGAAGACCGATCTACATTGATGGCAGACCCGTCCTGTCCGGCAACAAATGGAAGCTTAACAACAATTCTGTGTTGGAGatTGCAGGTCTTCGTTTTGTGTTCCTCATCAATCAGGAACTGATCTCCCTCATCAAAGCAGAGACAGCCAAGATGAACCAGCAGTGAACTGTGAAAAGAAACATGACGTACTTGTCTGTGTTTGCTCACTCTGATGAAACAGTAAGCTGATGGCCTTTAGTAATCAGTGAGCCATCAGTACTGAACTAAGCTGCGTTTCTCATCAGAAGAACAGACCTCTGGCGGTGTCGACGGTCCTGTAGATAAATGTGTACAAAGGGACCAGTTATAACAGGAGCTCAAAGGGCCCTTTGAGCACTTAGTAGAAGAGAGGTTCATCCAATTACATGAGAACGCTTTACGCACAATGTGGAGGCCTCTCAGAGACCAGGCCAGTGTGCAGGGAGGCTTGGACTAAAGACCCGGTTGTACTTAAATTCACATTACAATAAACTCACTATTCCTTGAGATGCACTAACATACTACAGAACCTGTTCCTCatattaagtaaacaaatcCGTTCTGAACTGTTATCTCAGAGTGGCGATGTCCTTTTGAATATGTGCCAATTTACTTGTCTAAACTCTGATGTAATCGTTtaactgttttattctataaagaataaaagaacatattattcacaaatacaaaatgaacagtaaaaaaggcacaaaaaaaaacgtatgtTGCAGTCTGAGATttgagcactgcagtgacactggcatggtggcAGAGGGTTAGTGTGTGTTGGGCTGGTATGAGTGTATCatacacctaaaaaaaaaagggattttatttccTCAGTGTTCACGCACTCGTCACTGTATGAGACACTCTTACCTAGCTGTTCCACCATGTAGATAAggactgcagtgctgagaataacccAACACCCAAATAATGGTGgttctgtggggtcctgaccattaaagatCAGGGAAAATGGAGGTTTATACAGTATGCAGACAAACAGCAGGTACAtgcatacatactgtatatgattGTGTTGTTTTGACCACTGTTGTAAATTTGAAAGCAAGTAGTAAATCTGAAtatgtttttctgtattatttgggttctacaaaaatacatttaaaaaaggtcTTATCACTGAAGATGGAAAACATTTTGTGTCCTGTGGATTATTACAGAATAATACATCGAAAA

Function

symbol description
mcrs1 Predicted to enable G-quadruplex RNA binding activity. Acts upstream of or within cilium assembly and retina layer formation. Predicted to be part of NSL complex. Is expressed in brain; eye; pronephros; and spinal cord. Orthologous to human MCRS1 (microspherule protein 1).

NR:

description
PREDICTED: microspherule protein 1

GO: NA

KEGG:

id description
K11674 MCRS1, INO80Q; microspherule protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682431.1 True 2748 mRNA 0.45 15 14679927 14694115

Neighbor

gene id symbol gene type direction distance location
suox suox coding downstream 2449 14668007 ~ 14677478 (-)
LOC103046666 Tuba1a,tuba1a,LOC108255233,LOC108275946,LOC106934846 coding downstream 19980 14656245 ~ 14659947 (-)
LOC111195382 tuba1c,LOC108431527,LOC105935211,LOC102211704 coding downstream 25593 14647806 ~ 14654334 (-)
prph prph coding downstream 41577 14624822 ~ 14638350 (-)
tamm41 tamm41 coding downstream 58515 14610951 ~ 14621412 (-)
dnajc14 dnajc14,LOC107562234 coding upstream 26270 14720385 ~ 14728314 (-)
LOC103038772 NA coding upstream 60261 14754376 ~ 14764355 (-)
LOC103039087 NA coding upstream 73198 14767313 ~ 14778341 (-)
LOC103039903 LOC103039903,LOC108431517,LOC108255002,LOC107697969,LOC107598614,LOC107715030,LOC107671896,LOC102210977 coding upstream 92207 14786322 ~ 14795751 (-)
LOC103040538 si:ch73-190f16.2,nabp2,LOC108424604,LOC107557546,LOC108255000,LOC107572067 coding upstream 153007 14847122 ~ 14856386 (-)
G189808 NA non-coding downstream 83353 14594996 ~ 14596574 (-)
G189803 NA non-coding downstream 133282 14545906 ~ 14546645 (-)
G189789 NA non-coding downstream 256257 14420713 ~ 14423670 (-)
G189779 NA non-coding downstream 354630 14324804 ~ 14325297 (-)
G189778 NA non-coding downstream 368885 14310305 ~ 14311042 (-)
G189814 inpp1,LOC107683640,LOC107730897,LOC107562242,LOC107737355 non-coding upstream 13620 14707735 ~ 14709526 (-)
G189821 inpp1 non-coding upstream 18768 14712883 ~ 14713733 (-)
G189823 NA non-coding upstream 23321 14717436 ~ 14799628 (-)
G189834 NA non-coding upstream 65673 14759788 ~ 14760374 (-)
G189835 cnpy2,LOC103039390,LOC108431501,LOC107572063 non-coding upstream 86433 14780548 ~ 14782900 (-)
tsen2 NA other downstream 1603185 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 1965895 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2060361 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2284395 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2501317 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 624528 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 715092 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1651586 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1875508 16569623 ~ 16599317 (-)
cass4 NA other upstream 2139735 16833850 ~ 16869461 (-)

Expression


Co-expression Network