LOC103023479 (tnnc1,LOC103023479,LOC108424583,LOC106571909,LOC103385538)


Basic Information

Item Value
gene id LOC103023479
gene name tnnc1,LOC103023479,LOC108424583,LOC106571909,LOC103385538
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22005434 ~ 22012959 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248436.3
AAACCTCCCAAACCTCCCAAACAGAGACGGACAGGACCTGAGGTTCCGCTTACCATGGACGACATCTATAAAGCAGCGGTGGAGCAGCTCACTGAGGAACAGAAAAGTGAGTTTAAGGCAGCGTTCGAGGTGTTCGTGCAGGATGCGGAGGACGGCTGCATCAGCACCAAGGAGCTGGGTAAAGTGATGAGGATGCTCGGCCAGAACCCGACCCCAGAGGAACTGCAGGAGATCATTGATGAAGTGGATGAAGATGGAAGCGGGACGGTGGATTTTGATGAGTTCCTGGTGATGATGGTGAGATGTATGAAGGACGACAGCAAAGCCAAGTCTGAGGAGGAGCTCGCCGACCTCTTCAGAATGTTCGACAAGAACAAAGACGGGTATATCGACATGGAGGAACTTCGGGCCATGCTGACATCCACTGGAGAGTCTATCAGTGAGGATGATGTTGAAGAACTGATGAAAGATGGAGACAAGAACAACGACGGAAAGATAGATTATGATGAGTTTCTGGAGTTCATGAAGGGAGtggagtaaaaacaaaaatcaacacTGCTATTGTACATTGCCCTCGGGTGTGATGTTTTATATCTCACTGAA

Function

symbol description
tnnc1 Enables several functions, including calcium-dependent protein binding activity; cytoskeletal protein binding activity; and protein homodimerization activity. Involved in cardiac muscle contraction; regulation of muscle contraction; and ventricular cardiac muscle tissue morphogenesis. Part of cardiac Troponin complex. Implicated in dilated cardiomyopathy 1Z; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 13.

NR:

description
troponin C, slow skeletal and cardiac muscles-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K05865 TNNC1; troponin C, slow skeletal and cardiac muscles

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248436.3 True 603 mRNA 0.49 6 22005434 22012959

Neighbor

gene id symbol gene type direction distance location
cdk4 cdk4,LOC107747701,LOC106565448,LOC107701179,LOC107567936 coding downstream 341835 21647105 ~ 21663599 (-)
LOC103033505 agap2 coding downstream 375100 21598127 ~ 21630334 (-)
LOC111195407 NA coding downstream 422371 21572367 ~ 21583063 (-)
arfgap1 arfgap1 coding downstream 434783 21550755 ~ 21570651 (-)
LOC111195406 NA coding downstream 497173 21508052 ~ 21508261 (-)
tmbim6 tmbim6,LOC106583271 coding upstream 177865 22190824 ~ 22205696 (-)
avil avil coding upstream 194163 22207122 ~ 22229088 (-)
ctdsp2 ctdsp2,LOC106583267,LOC106565429 coding upstream 224488 22237447 ~ 22247617 (-)
LOC103037062 LOC108424641,LOC106583265,LOC103359365,LOC100304514 coding upstream 246700 22259659 ~ 22284657 (-)
LOC111195450 NA coding upstream 273650 22286609 ~ 22293538 (-)
G191898 NA non-coding downstream 3254 21999172 ~ 22002180 (-)
G191884 NA non-coding downstream 38722 21966509 ~ 21966712 (-)
G191880 NA non-coding downstream 47002 21957841 ~ 21958432 (-)
G191870 NA non-coding downstream 80586 21860126 ~ 21924848 (-)
G191858 NA non-coding downstream 171939 21833142 ~ 21833495 (-)
G192005 NA non-coding upstream 244956 22257915 ~ 22258796 (-)
G192009 NA non-coding upstream 294648 22307607 ~ 22309156 (-)
G192012 NA non-coding upstream 329433 22342392 ~ 22342630 (-)
G192014 NA non-coding upstream 353049 22366008 ~ 22366333 (-)
G192120 NA non-coding upstream 394287 22407246 ~ 22441456 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 153792 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 460603 21510924 ~ 21544831 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 568981 21430016 ~ 21436453 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 902216 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 2476854 19511321 ~ 19528580 (-)
alas1 alas1,LOC106583798 other upstream 336388 22349347 ~ 22362458 (-)
amhr2 NA other upstream 696590 22709549 ~ 22722905 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 773204 22786163 ~ 22803642 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 1041674 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 2026287 24039246 ~ 24105898 (-)

Expression


Co-expression Network