ctdsp2 (ctdsp2,LOC106583267,LOC106565429)


Basic Information

Item Value
gene id ctdsp2
gene name ctdsp2,LOC106583267,LOC106565429
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22237447 ~ 22247617 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682620.1
GCTGTAAAGAATGCTGCTGCTACTCCCACTTCCGCTGGGTCCAATCGGGGCGGCGCGCGGTTTCAAGGCGCCCCAGAAGCTCAAAAACAAAGGTGTTCCGCACTGAACGCGCCGACAGAACCAAACTCGCGCGCGATTATCGGACTTTTCTCGCTGTAAATCGGCACTCGGTTCGCTCTGTTCCGCTGTTGGCTCGGCGGGAGTTCGGTTCGGGTGGATGTTTATCTCCGGTGCGGGGGGCTTGAAACCGGTCGCTGCCCCATTTCCTCGCTTGTCGCGCGGCTCCGGGATTCTCCATGTTGGAGCGAAACCGGGCAGAATCCCCGTATCTCCGCGCGGCCCAGTAACGTCACGGCGCTCTGATCTCTCCCGCGAGCCGAACCGAGATCAAACGAACCGACCCCCGAAGCGCGAGCCGCAGCAGGTGATGCGCGGTGTTTGATGCGCGGCAGCAGCGCGAGGAGGGAAGCGCCGAACCGGCGGAACCGGACCGGACCGGACTCGGGGATTCGCGCTTATTAGATGGAAAGTTCGATCATCACACAGGTGCACAGAGAGGATATTCAGCTGCCCAGCAAACCAGGCCAGGTGAAGAAATCTTCTCCCAAGAAACCTCGAAGCCGGAATATCTTCAAAGCACTTTTCTGTTGCCTCCGAGCACAGGATGTCCCCCAGCCGCCACTGCCACCTGCCCAGGATAACCTGCTGCCCCCTGAAGAGAATGGGACCATTGCCAAGATTCCAGGGAGCAGCCTGCTGCCCGAGGTGACGCCGGAGGACCAGGGAAAGATCTGTGTTGTTATAGATTTGGATGAAACTCTGGTGCACAGCTCGTTTAAGCCAATCAGTAATGCTGACTTTATTGTTCCAGTGGAGATAGAGGGAACAACACACCAGGTGTATGTTCTGAAGAGACCACATGTGGACCGGTTCCTTCAGAGGATGGGAGAGATGTTTGAATGCGTGCTGTTCACTGCCAGCCTTGCCAAGTACGCTGATCCGGTCACAGACCTGCTGGACCAGTGTGGAGTGTTCCGGACTCGGCTTTTCCGAGAGTCCTGCATCTTCCACCAGGGCTGCTACGTCAAAGACCTGAGCCGGCTCGGACGCCAGCTCAGCAAAACCCTCATCCTGGACAATTCTCCAGCTTCCTACATCTTCCACCCCGAGAACGCTGTGCCTGTGGTGTCTTGGTTTGATGACCTGGAGGACACGGAGCTGCTGAACCTGCTGCCTGTGTTTGAGGAGCTCAGCGCAGTGGACGACGTCTGCGCCAAACTGCGGCAGCTCCGAGAACCGTGACCGGACCTTCTCCGCCTGCGCCGGTGCCCCTGTCGACCCGCCGACCCGATGCACTCAGCACCAGGAGAGCCTTTAATGCCTCTACAATGCCTTATCCTGCAAACACCACCTACACACTCCCACAGAGGCACTGACACGtcacagagagaaaagagagaaagagagagagagtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttttgtgtgtgttaatattCCATTCGATTATCTTGTTTGGAAACAATCAGACATGAGCAGACGTTAATACTCCCGAGCCGTTAGTCCTCATACAACTCCTCGTACATCACGTACGTCATTTAGCACCAACCATAAACCTCAGTCCAGCCTGTGCCCTGTATATTACACTGCAGAggatagaaaataataatggtAGGAGAAATTATCcattatatagtttatagtgtATGTAATATTactcaatcaattaatcaactaatcaatcaGCCAGTCAAACTTTATTTATCACTTTTAACCTTCATCAACACAGCCAAACATGTACAACTTAAAAAGAATTTAGTTAAggaaaaattaagtaaaacattttaaacaaacaa

Function

symbol description
ctdsp2 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Acts upstream of or within neuron differentiation. Is expressed in brain; eye; fin; integument; and muscle. Orthologous to human CTDSP2 (CTD small phosphatase 2).

NR:

description
PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 isoform X1

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682620.1 True 1892 mRNA 0.53 7 22237447 22247617

Neighbor

gene id symbol gene type direction distance location
avil avil coding downstream 8359 22207122 ~ 22229088 (-)
tmbim6 tmbim6,LOC106583271 coding downstream 31751 22190824 ~ 22205696 (-)
LOC103023479 tnnc1,LOC103023479,LOC108424583,LOC106571909,LOC103385538 coding downstream 224488 22005434 ~ 22012959 (-)
cdk4 cdk4,LOC107747701,LOC106565448,LOC107701179,LOC107567936 coding downstream 573848 21647105 ~ 21663599 (-)
LOC103033505 agap2 coding downstream 607113 21598127 ~ 21630334 (-)
LOC103037062 LOC108424641,LOC106583265,LOC103359365,LOC100304514 coding upstream 12042 22259659 ~ 22284657 (-)
LOC111195450 NA coding upstream 38992 22286609 ~ 22293538 (-)
eef1akmt3 NA coding upstream 50235 22297852 ~ 22303090 (-)
LOC103024753 LOC108424569 coding upstream 212841 22460458 ~ 22639548 (-)
LOC103040317 faim2 coding upstream 445459 22693076 ~ 22705489 (-)
G191898 NA non-coding downstream 235267 21999172 ~ 22002180 (-)
G191884 NA non-coding downstream 270735 21966509 ~ 21966712 (-)
G191880 NA non-coding downstream 279015 21957841 ~ 21958432 (-)
G191870 NA non-coding downstream 312599 21860126 ~ 21924848 (-)
G191858 NA non-coding downstream 403952 21833142 ~ 21833495 (-)
G192005 NA non-coding upstream 10298 22257915 ~ 22258796 (-)
G192009 NA non-coding upstream 59990 22307607 ~ 22309156 (-)
G192012 NA non-coding upstream 94775 22342392 ~ 22342630 (-)
G192014 NA non-coding upstream 118391 22366008 ~ 22366333 (-)
G192120 NA non-coding upstream 159629 22407246 ~ 22441456 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 385805 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 692616 21510924 ~ 21544831 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 800994 21430016 ~ 21436453 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 1134229 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 2708867 19511321 ~ 19528580 (-)
alas1 alas1,LOC106583798 other upstream 101730 22349347 ~ 22362458 (-)
amhr2 NA other upstream 461932 22709549 ~ 22722905 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 538546 22786163 ~ 22803642 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 807016 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1791629 24039246 ~ 24105898 (-)

Expression


Co-expression Network