tmbim6 (tmbim6,LOC106583271)


Basic Information

Item Value
gene id tmbim6
gene name tmbim6,LOC106583271
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22190824 ~ 22205696 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682618.1
CAGGCTCCGCCCCCAAAACACAGCACTTACCCGAGACCGTACAGCAGTCTGACAACGCAGGCCCAGAACTGCGGGGTTTATCCGCTAAACTGAAGAAATTTACAACTGGTAATTTCCAGTACCACAGGAAAGAAAGATGAACGTGTTTGATCGCAACATCAACTTTGATGCCCTCTTCAAATTCTCTCAGATCTCCCGCTCCACTCAGCAGCACCTGAAGAATGTGTACGCCAGTTTagctgtgtgtatgtttgtggcAGCAGCCGGAGCCTATGTCCATGTCGTCACAAGAATTTTTCAGGGTGGGCTTCTCTCCATGCTGGGGTCTCTGGCCATGATGGCTTGGCTTGCGATGACTCCTCACAGCCCTCAGACTGAGAAGAAGAGACTGGGCATCCTCGCCGGCTTTGCTTTCTGCACAGGTGTTGGACTCGGACCTGTGATGGATTATGTCATCACCATCAACCCCAGtATCATCATAACTGCGTTTCTGGCCACCTCTGTGATCTTCACCTGCTTCACCCTGAGTGCCCTGTATGCCCAGCGCCGGAGTTACCTGTTCCTGGGAGGAACGCTGATGTCCGGACTCTCtattctgctgctgctctcctTCCTCAACATATTTGTTGGATCAGTCATGCTCTTTAAGgCTCACGTCTACATTGGTCTTGCCATCATGTGCGGCTTTGTGCTGTTCGACACTCAGCTGATCATTGAGAAGGCAGAGATGGGAGATAAAGATTACATCTGGCATTGTGTTGATCTGTTCCTGGACTTTGTGACCATCTTCAGAAAGCTCATGGTCATCCTCGCCATGAATGAGAAGgacaagaagaaggagaagaaatagagagatctgaacagaacagaaaaaaaaaatctgtgatttgTTTGCGTCAGAAGTGAATCTGACACATTCATCCTAACAGCTTCATTCTGAATTTGATTCTGTTGATTTTGTACTTTATATGATATGGTgtcttaattttgtttaaattacagATTTAGGCTGTGTAGTAAAGTGAACAGATGTGACCTGGGTTTAATGTTTTGGCGGTTTGTACTTTGCTGATTTTGAGTTATTTTGGCAGTTTAGAGTTTTTGAGGCGGCCGGAtgtaaatgaaattattttttttcccctcttcctCCTTTCTTCCTTCTGACTCTGATTAACACTTTAATGTAAttccgtattttttttttttagtctgtaCGATAAGCAGAGCATAGAGTGAGGTCttattgtaaatattgtgaAGAATCTGACTGCAGTTCTAACTTTAATAACTCATTCGTGctcaatttctttaatttacatttctttaatttttattactGCAGTACGAAGCCCCTCCTACTGAAATCCAGCAAATATGAAGGTGGATTTCTCTCTATCGttctgtttcagttttattattattgcagctGCTGGACACGCCAATATTACAAAGTCCAGCACTCAGGCAGTGAGGGACGTGCTTATCGTCACTGCTGGTAAAGGGTGAGGTATCTAggttgtattttattaatggacGTCCTACTGACTAACGATATTAATAAATAGTGCCACAGTTTGCTGATCGCT

Function

symbol description
tmbim6 Enables endoribonuclease inhibitor activity and ubiquitin protein ligase binding activity. Involved in several processes, including negative regulation of RNA metabolic process; negative regulation of intrinsic apoptotic signaling pathway; and response to L-glutamate. Acts upstream of or within negative regulation of calcium ion transport into cytosol. Located in endoplasmic reticulum membrane and mitochondrial membrane. Biomarker of cervical squamous cell carcinoma and prostate carcinoma.

NR:

description
PREDICTED: bax inhibitor 1

GO: NA

KEGG:

id description
K21889 TMBIM6, BI1, TEGT; Bax inhibitor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682618.1 True 1586 mRNA 0.43 10 22190824 22205696

Neighbor

gene id symbol gene type direction distance location
LOC103023479 tnnc1,LOC103023479,LOC108424583,LOC106571909,LOC103385538 coding downstream 177865 22005434 ~ 22012959 (-)
cdk4 cdk4,LOC107747701,LOC106565448,LOC107701179,LOC107567936 coding downstream 527225 21647105 ~ 21663599 (-)
LOC103033505 agap2 coding downstream 560490 21598127 ~ 21630334 (-)
LOC111195407 NA coding downstream 607761 21572367 ~ 21583063 (-)
arfgap1 arfgap1 coding downstream 620173 21550755 ~ 21570651 (-)
avil avil coding upstream 1426 22207122 ~ 22229088 (-)
ctdsp2 ctdsp2,LOC106583267,LOC106565429 coding upstream 31751 22237447 ~ 22247617 (-)
LOC103037062 LOC108424641,LOC106583265,LOC103359365,LOC100304514 coding upstream 53963 22259659 ~ 22284657 (-)
LOC111195450 NA coding upstream 80913 22286609 ~ 22293538 (-)
eef1akmt3 NA coding upstream 92156 22297852 ~ 22303090 (-)
G191898 NA non-coding downstream 188644 21999172 ~ 22002180 (-)
G191884 NA non-coding downstream 224112 21966509 ~ 21966712 (-)
G191880 NA non-coding downstream 232392 21957841 ~ 21958432 (-)
G191870 NA non-coding downstream 265976 21860126 ~ 21924848 (-)
G191858 NA non-coding downstream 357329 21833142 ~ 21833495 (-)
G192005 NA non-coding upstream 52219 22257915 ~ 22258796 (-)
G192009 NA non-coding upstream 101911 22307607 ~ 22309156 (-)
G192012 NA non-coding upstream 136696 22342392 ~ 22342630 (-)
G192014 NA non-coding upstream 160312 22366008 ~ 22366333 (-)
G192120 NA non-coding upstream 201550 22407246 ~ 22441456 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 339182 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 645993 21510924 ~ 21544831 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 754371 21430016 ~ 21436453 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 1087606 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 2662244 19511321 ~ 19528580 (-)
alas1 alas1,LOC106583798 other upstream 143651 22349347 ~ 22362458 (-)
amhr2 NA other upstream 503853 22709549 ~ 22722905 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 580467 22786163 ~ 22803642 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 848937 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1833550 24039246 ~ 24105898 (-)

Expression


Co-expression Network