Gene
RNA
| Item | Value |
|---|---|
| gene id | G75976 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 11175300 ~ 11175507 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU86679 | True | 208 | lncRNA | 0.29 | 1 | 11175300 | 11175507 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_11088423_11089301 | NA | coding | downstream | 85108 | 11088141 ~ 11090192 (-) |
| CI01000012_11068977_11070913 | NA | coding | downstream | 103971 | 11068861 ~ 11071329 (-) |
| CI01000012_11047566_11050458 | NA | coding | downstream | 122888 | 11047388 ~ 11052412 (-) |
| CI01000012_11000305_11008211 | SLC24A3 | coding | downstream | 165463 | 10999678 ~ 11009837 (-) |
| CI01000012_10993043_10996095 | NA | coding | downstream | 179205 | 10992471 ~ 10996095 (-) |
| CI01000012_11292683_11315522 | NA | coding | upstream | 117176 | 11292683 ~ 11316018 (-) |
| CI01000012_11585774_11608639 | NA | coding | upstream | 410121 | 11585628 ~ 11608975 (-) |
| CI01000012_11799629_11846842 | BCL11A | coding | upstream | 624122 | 11799629 ~ 11846842 (-) |
| CI01000012_11905259_11905909 | NA | coding | upstream | 729649 | 11905156 ~ 11906244 (-) |
| CI01000012_11925364_11925971 | PHS, PCBD1 | coding | upstream | 749492 | 11924999 ~ 11925971 (-) |
| G75973 | NA | non-coding | downstream | 1429 | 11173577 ~ 11173871 (-) |
| G75969 | NA | non-coding | downstream | 12722 | 11162244 ~ 11162578 (-) |
| G75961 | NA | non-coding | downstream | 19808 | 11154688 ~ 11155492 (-) |
| G75958 | NA | non-coding | downstream | 22342 | 11152621 ~ 11152958 (-) |
| G75956 | NA | non-coding | downstream | 24111 | 11150862 ~ 11151189 (-) |
| G75995 | NA | non-coding | upstream | 21800 | 11197307 ~ 11197733 (-) |
| G76001 | NA | non-coding | upstream | 30447 | 11205954 ~ 11206153 (-) |
| G76012 | NA | non-coding | upstream | 58319 | 11233826 ~ 11236699 (-) |
| G76683 | NA | non-coding | upstream | 85809 | 11261316 ~ 11261582 (-) |
| G76896 | NA | non-coding | upstream | 533359 | 11708866 ~ 11709233 (-) |
| G75608 | NA | other | downstream | 554429 | 10611915 ~ 10620871 (-) |
| G74982 | NA | other | downstream | 1599328 | 9575648 ~ 9576149 (-) |
| CI01000012_09400481_09401810 | EIF4EBP2 | other | downstream | 1773332 | 9398076 ~ 9402378 (-) |
| CI01000012_09082056_09083285 | NA | other | downstream | 2091811 | 9081877 ~ 9083489 (-) |
| CI01000012_09071892_09073410 | NA | other | downstream | 2101843 | 9071371 ~ 9073457 (-) |
| CI01000012_12047175_12052116 | NA | other | upstream | 873537 | 12046728 ~ 12052541 (-) |
| CI01000012_12079581_12084139 | NA | other | upstream | 903429 | 12078936 ~ 12084260 (-) |
| CI01000012_12954694_12954954 | SF3B5, BRAFLDRAFT_284483 | other | upstream | 1778939 | 12954446 ~ 12957833 (-) |
| G77287 | NA | other | upstream | 2443769 | 13619276 ~ 13633819 (-) |
