G81539


Basic Information

Item Value
gene id G81539
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5582596 ~ 5583268 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU92772
CTAAAGTGTTTGGATTTTCTCACAGCCATAGCAGGTTCTGCTAGGTAAAGAGTACAAAATAAATTAAATTAGCAGTTCTAGTTAAAATATATGCACAATACCTGCTTGAAAATCATTATTTTGGTTGTATTTTTCCTCCTAAAAAAATTCATGCTACATTTAACTTCTTTTTTTTTAAAACATAACAAAATTTGCAGTTATACTTGAAATCATGTCCTTAAAGGGGGGGTATCACACAGTTTCTGCCAATCTCATGTTAATCTCGAGTACCTATAGAGTAGTAGTGCATCCTTCATATCTCCGAAAAGTCTTTAGTTTTATCATATTTATACAAGATACATACGCTGTACCGAGTCTTTCCGAAAACAGCCGAGCTCCTGGAGGCGTGCCGTGTGAGCGGAGCTAAAGAGTCACGAGCACGCGCAGCTTTTGCTTAGCGATCATATGAACGCTATCAATGGTCAGCTAAACAAATGTATTTAAACACACACAATACACCATCGCATTATCCCTGGATAACTTTTGAATCACTATAATGAATATAGCGTAAAGTGAATAATGAATTTATGAATTCACTACATTCGTGTTTACATTATATGCACTTAGGCACCTATTGCCAACAAAACAGACACACAAGGTTTACTCACCACCTGCGGTTTCGACTCATGACCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU92772 True 673 lncRNA 0.37 1 5582596 5583268

Neighbor

gene id symbol gene type direction distance location
CI01000013_05561156_05569165 NUP93 coding downstream 13431 5561070 ~ 5569165 (-)
CI01000013_05553557_05558467 NA coding downstream 23775 5553207 ~ 5558821 (-)
CI01000013_05524940_05539115 SLC12A3 coding downstream 43481 5524708 ~ 5539115 (-)
CI01000013_05516705_05523845 HERPUD1 coding downstream 58751 5516148 ~ 5523845 (-)
CI01000013_05508865_05515065 CETP coding downstream 67531 5508397 ~ 5515065 (-)
CI01000013_05592121_05601330 CUNH16ORF70, CLG7H16ORF70, C11H16ORF70, C4H16ORF70, C2H16ORF70, C14H16ORF70, C5H16ORF70, C16H16ORF70, C18H16ORF70, CE2H16ORF70, CLG19H16ORF70, C20H16ORF70 coding upstream 8853 5592121 ~ 5601330 (-)
CI01000013_05626666_05631514 NA coding upstream 42845 5626113 ~ 5631646 (-)
CI01000013_05638498_05647534 NA coding upstream 55210 5638478 ~ 5647534 (-)
CI01000013_05652235_05656208 NA coding upstream 68850 5652118 ~ 5656457 (-)
CI01000013_05688638_05691660 NA coding upstream 105315 5688583 ~ 5691928 (-)
G81507 NA non-coding downstream 404522 5177767 ~ 5178074 (-)
G81498 NA non-coding downstream 426300 5156087 ~ 5156296 (-)
G81463 NA non-coding downstream 432270 5149942 ~ 5150326 (-)
G81494 NA non-coding downstream 432932 5149361 ~ 5149664 (-)
G81540 NA non-coding upstream 1733 5585001 ~ 5585201 (-)
G81543 NA non-coding upstream 23889 5607157 ~ 5609589 (-)
G81545 NA non-coding upstream 27593 5610861 ~ 5611159 (-)
G81546 NA non-coding upstream 28057 5611325 ~ 5611524 (-)
G81570 NA non-coding upstream 108758 5692026 ~ 5696099 (-)
G81032 NA other downstream 832035 4748809 ~ 4750561 (-)
CI01000013_04561253_04567647 MAP2K1 other downstream 1023693 4560340 ~ 4567647 (-)
G80443 NA other downstream 1516579 4064942 ~ 4066017 (-)
G80399 NA other downstream 1676356 3904067 ~ 3906240 (-)
G80271 NA other downstream 1858989 3719433 ~ 3723607 (-)
G81547 NA other upstream 156258 5739526 ~ 5744038 (-)
CI01000013_05883498_05884071 CHTF8 other upstream 298781 5882049 ~ 5884071 (-)
CI01000013_07339918_07367774 NA other upstream 1756441 7339709 ~ 7367774 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 3723768 9307036 ~ 9336077 (-)
G85170 NA other upstream 4896593 10479861 ~ 10480700 (-)

Expression


Co-expression Network