G85170


Basic Information

Item Value
gene id G85170
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10479861 ~ 10480700 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU96930
CTGGACTACAAATCCCAAGCGCCCACATACCTGGCCTGATTACGGCGCACCTGTTTCACGTCAGCCAGCTATTTAAGCCACACACACACACTCCTTGCAAAGTATTGTTTGCCCAGCAACAATTTCTGAGCGTTTTTCCCTGTTTTCTATCTGCCTGTGTATTGACCTTGTTTGGATTACTGCCCTTGGATTGTTTGCCACCTGCCTGTTACCCTTTGTTTGCCTGGACTGCGTCTTTGATTGTTTGCTGCTTGCCCCGATCTCTTGCCCGGTTATGACCACAATCATAGGACTGTCTCTGACACTGTTGTTTACCCTGCAAGGGTCACAGCCGCTGATTTCGCCCTAACTTTTCGCACGCTCACTGCGCAGACCGTATGGGTGGAAGCTACACTAAAGCTGCTGTTTCGACAAGGATTGAATATGGATTTGCAGTCCGAACCTGCTTGTCGCGACTAGGGGATGACGATGGACCAGTTCATTGAGTTAGCCATCCGTTTGGACAATCTGATACGTTCACGTAGATCTACCTGCGTCACCAATCCTCTCAGCCAAACTAATCTAGCCCCCGAAGTCGCAGAACCCATGCAAATCGGACGCACACACCTCTCTGCTGAAGAGCGTGAACGCCGCATCAGGAACCGCCTTTGCTTATACTGCGGACAAGCGGGCCATTTGAGAGCTGAATGCCCGACGCGTCCTCCCCATGTGCCGGATCGCAGGGTGAGTTTACTGATTTCCTCCATTCAAACTACCCATTGTATTGACGTACCTGTCCAACTCACATTCCAAGATAACACACTGTCTACTAAAGCATTGTTGGACTCAGGGGCAGCAGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU96930 True 840 TUCP 0.51 1 10479861 10480700

Neighbor

gene id symbol gene type direction distance location
CI01000013_10338616_10372320 SEMA3D coding downstream 104705 10338538 ~ 10375156 (-)
CI01000013_10218387_10244139 SEMA3A, SEMA3AB coding downstream 235722 10218370 ~ 10244139 (-)
CI01000013_10127318_10157548 SEMA3E coding downstream 322313 10127196 ~ 10157548 (-)
CI01000013_10037048_10083444 PCLOB coding downstream 396417 10037048 ~ 10083444 (-)
CI01000013_10014588_10020597 NA coding downstream 459264 10014385 ~ 10020597 (-)
CI01000013_10540473_10556642 NA coding upstream 59715 10540415 ~ 10556688 (-)
CI01000013_10560692_10562065 NA coding upstream 79597 10560297 ~ 10562280 (-)
CI01000013_10564288_10569141 NA coding upstream 83018 10563459 ~ 10569290 (-)
CI01000013_10597504_10610862 IMPDH1B, IMPDH1, IMPDH1A coding upstream 116804 10597504 ~ 10610862 (-)
CI01000013_10799938_10806858 PRPF18 coding upstream 317898 10798598 ~ 10806858 (-)
G85167 NA non-coding downstream 5154 10474494 ~ 10474707 (-)
G85069 NA non-coding downstream 7353 10471917 ~ 10472508 (-)
G85155 NA non-coding downstream 32562 10446917 ~ 10447299 (-)
G85120 NA non-coding downstream 78753 10400546 ~ 10401108 (-)
G85117 NA non-coding downstream 84810 10394785 ~ 10395051 (-)
G85171 NA non-coding upstream 5427 10486127 ~ 10486350 (-)
G85172 NA non-coding upstream 6659 10487359 ~ 10487623 (-)
G85173 NA non-coding upstream 8134 10488834 ~ 10489357 (-)
G85174 NA non-coding upstream 9114 10489814 ~ 10490209 (-)
G85186 NA non-coding upstream 46686 10527386 ~ 10534187 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 1157017 9307036 ~ 9336077 (-)
CI01000013_07339918_07367774 NA other downstream 3097501 7339709 ~ 7367774 (-)
CI01000013_05883498_05884071 CHTF8 other downstream 4595489 5882049 ~ 5884071 (-)
G81547 NA other downstream 4735823 5739526 ~ 5744038 (-)
G81032 NA other downstream 5729300 4748809 ~ 4750561 (-)
G85188 NA other upstream 111504 10592204 ~ 10595337 (-)
G85401 NA other upstream 554332 11035032 ~ 11035466 (-)
CI01000013_11596784_11604320 NA other upstream 1118360 11596688 ~ 11604865 (-)

Expression


Co-expression Network