CI01000013_10799938_10806858 (PRPF18)


Basic Information

Item Value
gene id CI01000013_10799938_10806858
gene name PRPF18
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10798598 ~ 10806858 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_10799938_10806858.mRNA
ATGGATATCATCAAAGCAGAGATCGCGAGGAAAAGAAAACTCATACAGGAGAAGGAGCTCATAGACGACTCAAAGAAATACTTCAAAAGGGCTGATCTCGCGCGTAAGGAAGAGGAAGAATATTATAGGAGATGTGGATACAAGGTTTCTAATGAGCAGCCTGTGAGACAGCTTGACAAGACTGAGGATGAGGAGCCTCCATCTACATCAGCCAATCCTGCATTAGAACTAGAGCTCACGGAGGAGAAACTGCCAATGACGCTCTCTCGACAGGAGGTGATCAGACGTCTGAGGGAACGAGGTGAGCCGATCCGTCTGTTTGGCGAATCCGATTATGATGCTTTCCAGAGACTCCGCAAGATTGAAATCCTAGCACCAGAAGTAAACAAGGGATTGAGGAATGATTTGAAGGCTGCCATGGATAAGATCGATCAGCAGTATCTGAATGAGATAGTCGGTGGAACCGAGGGTTCAGAAGTGGACACACAGCACGACCTCAAAGTGCATGAGGAAAATACCACCATTGAGGAGCTGGAGGCTCTGGGAGCATCTCTTGGCACTGGTGATGATGTTCGAGACATGGACATCATAAATAAAGTACTGAGGTTCTTGCTGGGCGTGTGGGCTAAAGATCTAAACAGCCGAGAGGACCATGTGAAGCGTAGTGTCCAGGGCAAGCTCGCCAGTGCCACCCAAAAGCAGACTGAATCTTATTTGGAACCTCTTTTCAGAAAACTACGCAAGAAGAATTTACCAGCAGACATTAAGGAGTCCATTACAGACATCATAAAGTTCCTGCTGGAGAGGGAATATGTTAAGGCAAATGATGCTTATCTGCAGATGGCTATAGGAAACGCTCCATGGCCCATCGGTGTGACCATGGTGGGTATCCACGCTCGTACTGGACGTGAGAAGATCTTCTCCAAACATGTCGCCCATGTGCTCAATGACGAGACACAAAGGAAATACATTCAGGGGCTGAAAAGACTAATGACAATCTGTCAGAAACATTTCCCAACAGATCCCTCAAAGTGTGTGGAGTACAACGCTCTGTGATGTACACATCACAGCATTCAAAGTCATGTTGTCTGTCACTCGCTCATGTTGTATATAACTTATTGATTGTAAATATTACCCCCGTTTTGAGAACATTTGGATCTCTACAGCAGTAGTTTTCAATTCTGGTCCCGCTCTGCACATTTTGTATGTCTCCCTTATTTAACATACCTGATTCAGATCATCAGCTTGTTGGGTGAGAACTCCATGAACTGAACTGAGTGTGTCAGATAAGAGAGACATACAAAAAGTGCAGAGCAGTGGGTCCCTAGGATTGAAAATCATTGCACTACAGTGTTTTTTTTTTTTTTTTTTTAAATAAAAGCTGATGTTACTGTAGTGATGTTTTTCATTCCATTCATTGATTCTTGATGAATTTGCACTTTAATGTACATTACTGTGATAGTGGGCCGAACACTATGGAAAGCGTTAATTTATCTCTCTAGAGATGTAGGTCTGGTCTTTGACAGAAAGACCTTTTAAGGATGAATATCAAGATGACTTGCAATTTGAGTCACTCTCAAAACAAAACAGAAATCATGTCATTTTTTGACCTCCTGAGATGAGTTAAAGGAAGTGCTGAGTCACAGGAAGAGTGAGTGACTTCCTCACACTGGGACCAAATCAGATTTAAAACATGTACAAGCCAAATTCACACAACTTTGATCCTTGGATTTCCTGCTGACTTCCTCTGATTTCAGATTTGGGAAGTCTGATTCATTTTAGTGATTTGGTTGACATTCACTTTAAAGGGGATAATCTAAAGTTTTGTCATTGGTCTCTGTGCAGCAGTTTTTCCTAAACTGAGGTTTGTTAGGTAACTACAGGGGGTTTGTAAGGCAATGTAAAGCTAATTTTTTTTTTTTTTTTTTTTAAATTGACAATTAAAATAATTTGAAAAAGAATGAGTTTTTTCCCCCTAATGTTTAATGTATGTTTGAGCGTTCCAGTTTGATGCTATCATCCTAAGTGTTAGTTCCAGGAAAACACCCTGTTCAAACAAAATATTGTCAAATATTTCATTTTTATTATGGTTATGGCATATGACTCATACTGTAGTTATACTGGTGAAAGGACTTCTCTTTTAACTAGTCTCATACATTTGAGTGGTCCTCTGATTATTAGTTACTTTGACATGTAAATCAATTCACCACAGTTTTTGTTTCTATGTGCCATTTATGGGTAGGTTTATCTGAACCAAATTATATCACTGTAATATAATTTGGTATTTGAAAAAAAAACAAAAACAAAAAAAACATTAAAATGTACAATTGTACAGAAACACATTAAATGATACACACAACCAATCACAAGACAAGCATTTTTGTATTACCAATAAA

Function

symbol description
prpf18 Predicted to be involved in generation of catalytic spliceosome for second transesterification step and nuclear retention of unspliced pre-mRNA at the site of transcription. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nuclear speck. Predicted to be part of U2-type post-spliceosomal complex; U4/U6 x U5 tri-snRNP complex; and U5 snRNP. Orthologous to human PRPF18 (pre-mRNA processing factor 18).

GO:

id name namespace
GO:0016607 nuclear speck cellular_component

KEGG:

id description
K12817 PRPF18, PRP18; pre-mRNA-splicing factor 18

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_10799938_10806858.mRNA True 2396 mRNA 0.40 11 10798598 10806858

Neighbor

gene id symbol gene type direction distance location
CI01000013_10597504_10610862 IMPDH1B, IMPDH1, IMPDH1A coding downstream 187736 10597504 ~ 10610862 (-)
CI01000013_10564288_10569141 NA coding downstream 229308 10563459 ~ 10569290 (-)
CI01000013_10560692_10562065 NA coding downstream 236318 10560297 ~ 10562280 (-)
CI01000013_10540473_10556642 NA coding downstream 241910 10540415 ~ 10556688 (-)
CI01000013_10338616_10372320 SEMA3D coding downstream 423442 10338538 ~ 10375156 (-)
CI01000013_10828622_10836409 CPT1, CPT1B coding upstream 21673 10828531 ~ 10837146 (-)
CI01000013_10838711_10841053 NA coding upstream 31639 10838497 ~ 10841564 (-)
CI01000013_10843295_10852581 CHKB coding upstream 36302 10843160 ~ 10852581 (-)
CI01000013_10892125_10899628 ARSA coding upstream 84856 10891714 ~ 10899628 (-)
CI01000013_11262983_11266454 RABL2B coding upstream 455617 11262475 ~ 11266454 (-)
G85311 NA non-coding downstream 22385 10773780 ~ 10776213 (-)
G85262 NA non-coding downstream 38111 10756812 ~ 10760487 (-)
G85201 NA non-coding downstream 114035 10621530 ~ 10684563 (-)
G85196 NA non-coding downstream 211468 10586371 ~ 10587130 (-)
G85190 NA non-coding downstream 247328 10550928 ~ 10551270 (-)
G85343 NA non-coding upstream 93629 10900487 ~ 10900711 (-)
G85345 NA non-coding upstream 129523 10936381 ~ 10936656 (-)
G85346 NA non-coding upstream 132484 10939342 ~ 10939904 (-)
G85347 NA non-coding upstream 133702 10940560 ~ 10940887 (-)
G85348 NA non-coding upstream 134223 10941081 ~ 10941502 (-)
G85188 NA other downstream 203261 10592204 ~ 10595337 (-)
G85170 NA other downstream 317898 10479861 ~ 10480700 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 1475754 9307036 ~ 9336077 (-)
CI01000013_07339918_07367774 NA other downstream 3416238 7339709 ~ 7367774 (-)
G85401 NA other upstream 228174 11035032 ~ 11035466 (-)
CI01000013_11596784_11604320 NA other upstream 792202 11596688 ~ 11604865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012611 prpf18 coding NC_007129.7 CM002902.2 8402129 ~ 8408518 (+)