G85188


Basic Information

Item Value
gene id G85188
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10592204 ~ 10595337 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU96958
GGCCATTTACTAAGCACAGAGAGAAAAAGCATATCTTAAACATTTGCAAAAAAAGAGAAAAGTCAACAGTGAGACGATCTTAGAGAATATAAGCTGCTCTGTCTGTTAGTCTTTTGCTTCATGTGTTGAGCTTCTGCTGTCAATCACAAAGATGTGCACTAAAAATATGGCAAAGGCATAAGCTGTCACAACTTCTTGTTATTACATCTCCACGGCCAACAGAGGGCAGTATCTGCACCAGAATGTCAGGCATTATAAGCATTTGATTTTGTAAAGACGGAGGCTATGTTCGAAATGGACAACTAGCATATGACTGCATACTTTGCAGTTTATATATGTGAAAGATGTGCATTATACAACAATAAAAAAATGTCTTGCTGTAGTAGGCTCTGCTACATTGTTGTCACATGAGGTGTTATACGTATACAGAAAATTCACATACTACAGAAACAATGCAAGCAGTATACTAGCATGTTATTCCGAACATAGCCACAATATGCAATATGCTGCATGTGAATTGGCAGATAAACATTATTTCAATAAGATCGTGACATGAGTACATGATGTACATTTAGTATTTAATATGAAACTGCAGGGATTTTTCTGTTTTTCATTGTTATCTTCACGCAGCCTTTTGCTAATGACATCTTTCCCATAAGTTTATGCTTCAACAGAACATGTACAGTAGGTCTCATTCGAGAACAAAATGTTACCCAAGTAACAAAGCTGCCACAAATAATTGAGTTATGATAGTGCTGCAATGAATTGCAAATGAGTTCTATAGAATGTGTCTCTATACAGTAGTAACGTTGCCAAATGAGTGTTTAGGTGATCCATGCTGTAACAGCAAAGCCAAAGACTCATCATAAAAAATGTTCGCAAGTGCTAGCTTTATTGCTGAAAGGTACACAAAAGCCTCATGTTCTTTTTTAAAATTTGTCTTGATTCTTTCAAAGTCTTTTGATCAAGTCGAGCATTTTCAACAAGATTATATGTGATTTGTTAAAAAACGGGAAGTGGGTTTTAGGGAACTTCTCACAGTTGATAAAGAACATCAATCTTTCAGAGGTTGCTGTTTGCCATTTTGTCCTTGTCATGTCTCCTTCTAAAACAAAACATTTCTTTCCACTGAAGCAGAATGTTTCAACAGCAAATTCCCTGTCTACATCTATCTTAAGAAAATTTCTGTAAATTGGAGTAGCTAGGGCTGAAATTACTGTGGGTGTTAGGTTAGTTGATTCAGAGATTTCTTCCCCTAAAGGTCAATTGTATCACTACTGATACTGAGTGCATCTATCTGCCTGCAGACGTTGATGAATTCGGCCTGAACGGCATGCTCATCAACACGAGACGTTGTCTCCACATCCACGCTTCCTCTGGAGGACGTAGAGCCCAAGGCTGTGTACCGTCTGTGGAGTCGCTGCCCAGACTGTGAGCCCCTGTGTAGACTATTCTGAGACTGTTGTGCTGAGTTTAACCCACTGCAATGGACCGAGACCTGAGCTGGTCTCCCAGATATAGTGCTCCATTGCCTGGGTCGGTTGGGTACAGTAGCAGGGTCCACATCCCCACAGGAGGCAGTGCGGTACAGGCTGGGTTCAGTGGAGTTTCCCCAACAGGGTTGTCCATCCGGGGGTCCGCGCGTGCTAAGAGAGAGCCTAGAGGAGCCGAACAGGCTATGCTGGAACAGAGCTTCGCTGTTCAAGGCCTCGTCGATGCTTCGTCGCAGGTCGATGGGCGAAGGGGGCCGCAGATCTGCCGTGGAGTCGGCATCCAAGCTGGCAAAGGAGGACGCATGGGATCCTTTGCTCTTCTTTGCGGTTTGGGAGAGCTGTGTGGAAGACTCGTGCTGAGGGCTGCTGGGATAATGGAGGTCCAAACCATCAGATTCGCTGTGCGGAAGCTCCACCAAGGTGTAGAGCGGCACACTTTCGCTTTCCCGCCGTACTATTCCCTCACACAACCCCAGCTTCTCGGTGGGCCGTAGTGACCAGCCACACCGACTTGAGAAGATGGTGGGTTTTTCCAGTGTGGTTCCTTCTGTAGGTGGCTTTTTGAAGAACCAGCTGCAGGCACCAGATTTGGAAGGGGGCACTCCGCAACAGAGAAGGGGGTGAGTGATTACAAGAGCGAGGGTGAGACATACCCCTGTTTCACAAACTCGGCAGCTGAGCTGGAATCCCCACCAGGGCCAGGGCATCAGGCCAACCATGACCCCACCGGTCAGCCCTCCAGCGTTGAGCATGGCATAGAGTCGTAGACTGCCACATGCTAAGAGAAAGAGGGCAGAGAACACCCCAGCCCTGGCTGCCCTTTCCCACATCTGTGCCTCTGTGAATGGACACCTGCTGGCGTGGCACGATGGCCGCTCAGGAGAGCTCTCGTTCAGCCGGTAAATGTGCTTGACATCTGGCCGGGCGCAGCAGTAAAGAAGCAGGTACGTCAATGACAGGAGAGAGGACATCAAGACGAAGGCTGCAGGCGGTATTAGAGGCACAACTTGCAGGGTGGGAAAAAGTTGCAGTATTGCCATGGAAGCCATCACTATCGCTACGTGCAGCAGTACTAGGGCGGCCAACAGGCAGGTGCTGCGCTGCAGGGTGTTCTGGGAAAGTAGCTGGGTACAAGAGCGAGCAGTTAGCAGTAGCAGCAGCAGGCCAAATGATGCCGTAAGACAGGGATAGGCAGCTTCGTGTAGCAGTCGTGCCCAGACTACGGGAAGTCGCTCTTTTTGGCCGTATGGATCGTAGAGGAGCCACAGAGCCCGGCTGGAACCTGTCAGTAGCTGGAGAAGGTGGAGGAGGCTAAAGTGGGCACAACCAGAGGGCCAGCGCAATGGCAAACACATCAGGCTGAGCACAGACAGCACAGCCACAAGCGAGAACACACAGCCGAGCCCGTATACCTGCAATTCCCATGCCAGGCCCCATGTGGCCATGGCAGCATTCCAGTCAGTTAGTAGAGGGACTAACAGAGGCGGAGTCAGGGCTTCGAGGGGTGGGGTTATGACACCAGGGGGTGTGGTTTCATAAACAGGAGGTGGAGTGGACAGAGTGTTGTTAGTAGAAGCGTGATTCTTCGAAGAGTCAGGTGACTGACAGATCCCAGTACCAACCAGGTTGCAGTCCGGAAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU96958 True 3134 TUCP 0.48 1 10592204 10595337

Neighbor

gene id symbol gene type direction distance location
CI01000013_10564288_10569141 NA coding downstream 22914 10563459 ~ 10569290 (-)
CI01000013_10560692_10562065 NA coding downstream 29924 10560297 ~ 10562280 (-)
CI01000013_10540473_10556642 NA coding downstream 35516 10540415 ~ 10556688 (-)
CI01000013_10338616_10372320 SEMA3D coding downstream 217048 10338538 ~ 10375156 (-)
CI01000013_10218387_10244139 SEMA3A, SEMA3AB coding downstream 348065 10218370 ~ 10244139 (-)
CI01000013_10597504_10610862 IMPDH1B, IMPDH1, IMPDH1A coding upstream 2167 10597504 ~ 10610862 (-)
CI01000013_10799938_10806858 PRPF18 coding upstream 203261 10798598 ~ 10806858 (-)
CI01000013_10828622_10836409 CPT1, CPT1B coding upstream 233194 10828531 ~ 10837146 (-)
CI01000013_10838711_10841053 NA coding upstream 243160 10838497 ~ 10841564 (-)
CI01000013_10843295_10852581 CHKB coding upstream 247823 10843160 ~ 10852581 (-)
G85196 NA non-coding downstream 5074 10586371 ~ 10587130 (-)
G85190 NA non-coding downstream 40934 10550928 ~ 10551270 (-)
G85186 NA non-coding downstream 58017 10527386 ~ 10534187 (-)
G85174 NA non-coding downstream 101995 10489814 ~ 10490209 (-)
G85173 NA non-coding downstream 102847 10488834 ~ 10489357 (-)
G85201 NA non-coding upstream 26193 10621530 ~ 10684563 (-)
G85262 NA non-coding upstream 161475 10756812 ~ 10760487 (-)
G85311 NA non-coding upstream 178443 10773780 ~ 10776213 (-)
G85343 NA non-coding upstream 305150 10900487 ~ 10900711 (-)
G85345 NA non-coding upstream 341044 10936381 ~ 10936656 (-)
G85170 NA other downstream 111504 10479861 ~ 10480700 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 1269360 9307036 ~ 9336077 (-)
CI01000013_07339918_07367774 NA other downstream 3209844 7339709 ~ 7367774 (-)
CI01000013_05883498_05884071 CHTF8 other downstream 4707832 5882049 ~ 5884071 (-)
G85401 NA other upstream 439695 11035032 ~ 11035466 (-)
CI01000013_11596784_11604320 NA other upstream 1003723 11596688 ~ 11604865 (-)

Expression


Co-expression Network