CI01000013_10540473_10556642


Basic Information

Item Value
gene id CI01000013_10540473_10556642
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10540415 ~ 10556688 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_10540473_10556642.mRNA
AAATCGTTCACAAACACAAATATGTCCCAGTTCATTCATAGACACAATGTCCAAGTTCGTTCAATTTGTTCATGAGCAAGAAGTCGCAGTTCGTTTGGGAGCCAGAAGTGTTCGTTCGGGGGCCAGAAGTTGCAGTTCGTTCGGGGTCCAGAAGTTGCAGTTCGTTCGGGGTCCACAAGTCGCAGTTCGTTTAGGAGCCAGAAGTGTCCGTTCGGGGGCCAGAAGTCGCAGTCCGTTCGGGGGCCAGAAGTCGCAGTCCGTTCGGGGGCCAGAAGTCGCAACGGACTACTACTTTCAGTACACGGAGTGTGACAGCACCGGGTCCAGATGGAGGGTGGCCATTCCTCTGAATCCAGGAGAGTGTACAGGACTGCCAGACCCTGTGCAGGGCACTGAATGCACATTCTCGTGCAAGGCGGGGGAGTTTCTGGAGATGTCTGCTCAGGAGTGCACACAGTGTGCGGCTGGCACTTACTCCCTGGGCAGCGGCCTACGTTTTGATGAGTGGGACGACATCCCTCCTGGATTCAGCAGCCTAGCAACCTCCCCTGATAACTCACCCAACCGACAGGATGCATCCACCTGCAGCAGTGCAAAGTGGGTTGTTCAGGGCTCGTATCTGGAGTCCAACAGGGATGAGTGTACTGTGTCTCTGATCTACACTGTACACTTAAAGAAGCCGGGGTCTGTGTCCTTCGACTACCAGTATGTGGATAACAGCATCTTCTTTGAATTCTTTATTCAGAACGACCAGTGTCAAGAGATGGACCAGGATTCAAATAAAAAATGGATCAAACTGACTAGTCATGGAGAGTGGGGCACACATAGTGTTAATCTGAATTCTGGCACTAATATCCTGTACTGGAGAACTAGTAGAGTCACACTCGGCTCTAAAGCAGCCAAACCGGTACTCTTGAAGAACATACAGATAGAAGGGGTGGCGTACACATCAGAGTGTTTTCCGTGTAAGCCTGGGACTTTCAGTCGCACCCCGGGTTCCTCCTCCTGTGAGCCCTGTCCACGGGACACATACTCTGGCCGAGGGGCCAGCTCCTGCACCCCTTGCAACACAAAAACACACTACGCCTCAGAAGGTTCTGCCATGTGCAAAAGTAAATCTCCATGCACAGAGAAAGACTATATCCAGACCTACAACACCTGTGATAAGGATGGAAAGACTCGGGTCATATATAAGTGGGTAGAGCCTAAGATTTGTTTGGAGACTGCTGCAGGTGCAGTAACACTGCCACCTTCTGGTCAGCGTGAGCCGTGTCCACCCTGTAATCCCGGTTTCTATAACAACGACACTGCCACCTGTTCTCCCTGCCCACCCGGGACTTACTCGGATGGGGTCAAAGCTTGCCAGCCTTGTCCATCTGGCACAGAACCTGTCCTCGGGTATGAGTACAAGTGGTGGAACGTGCTGCCTGCCAACATGAAGACATCCTGCTTCAACGTGGCCAACAACAATTGTGATGGCTTGAATGGTTGGGAAGTAGCGGGTGATCACATACAATCAGGAGCAGGTCGTTCGGATAATGATTATCTCATTTTAACTCTCAGAGTGCCTGGATTCAAGTTGCCCGTGTCTGTTCAAGGAGCATCCGGCAGTGAGTACGGCCGGATCACTTTTGAGTTTGAAACCAGCTGCTCAGCTGACTGTGAGTTTTACTTTATGACGGATGTGAACAGAAGAAGCACAAATGTAGTTGAATCATGGGATGGGAGTAAAACCAAACAGAGTTACACACACATCATGACTGAAAACTCTTCTGTTGCGTTTACCTGGGCTTTCCAACGCACCAGTCAGGCTCGTGATGTGCGTCAGTATGTAAATGACATGGTGAAGATTTACTCTGTGACTGTCACCAATGCCATGGACGGGGTGGCGTCAGCGTGTCGTGCCTGTGCCCTGCAGTCTCAGCAGGCCGGCTCCTCCTGTGTGCCATGTCCAGCTGGACACTACATTGATAAAGAGACCAACCTGTGCCAAGAGTGCCCTCCCAACACCGTCCTGTCTGGGCACCACATCTATGGCAAAGAAACGTGCCAACCGTGTGGGCCGGGCAGCAAAAGCAACAAGGAGCACAGTGTGTGTTTTAGCGACTGTTCGTTCACATACACTGACCAGAATCGGACTCTTCAGTATGACTTCAGTGCTCTGACGTCCGCTGGGTCCATCATGAACGGGCCCAGCTTCACTGCGAAAGGCACAAAATACTATCACCTCTTCAATATCAGCCTGTGTGGAGCTGAGGGTCACAAGGCTGCAGTCTGCAGAGATAATGTCACAGACCTGCCCAATGAGGACGCTGAAGGTGGTCAGCTGGGCAGTTCAGTTGAGGCTTTTCTCTGTCAGTCAACGATTATTCCTTCAGATGGCCGGGGCTTACGAACAGCCCTTTCCTCTCAGTCCATTAGCCTGGCCGACACTTTTCAGGGAGCCACAGTGGAGAAATCACTTAACGGAATAACCACCAGACCAGAACTCTTTCCATCTCCATCCGAGAGAATCCCAGATGTCCACTTCTTCTATCGGCAACAAATGTCATTAAAATCGGCTTTAGCAGGGAACTGCAATGTAATATATGGTTTAAATCAAATAGACACGGTGTATATGTGGACTGAACCTCGGCTGTGTACTGGCGGACTGATTCTCCCGCTGAAGAGAACGTCTCCATGTGAGGCGATTGATTTCTGGCTGAAGGTGGGCGCTGGGCTTGGAGCGATCTGTGCTGTTCTGCTTGTCTCCCTGACCTTCTACTTTTGGAAGAAAAACAAAAAGCTGGAGTATAAGTATTCCAAACTCGTGATGACAGCCAATAAAGAGTGCGAGCTGCCGGCGGCGGACAGCTGTGCCATTATGGAAGGAGAAGGGGAGGAGAATGAGGAAGAGGATGTGGTTTATGCCAACAAGCCTTCTCTTCTGGCTAAGCTAAAGACTATCGCCACCAAGATGCCGTACGACCTCCCGTGGGAACTAGCTCAGATTGCGGTATACGAGTCAGTTTTGGTCCTGCAATTTTCAGGGAAGTTAATTAAGAGAATCCAATTCGAGAGGAATTAATCAATCATGTTCCCTCTGACTGGTTTGCCTTGGATAAACCCTGCTGAATAATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_10540473_10556642.mRNA True 3125 mRNA 0.50 21 10540415 10556688

Neighbor

gene id symbol gene type direction distance location
CI01000013_10338616_10372320 SEMA3D coding downstream 165259 10338538 ~ 10375156 (-)
CI01000013_10218387_10244139 SEMA3A, SEMA3AB coding downstream 296276 10218370 ~ 10244139 (-)
CI01000013_10127318_10157548 SEMA3E coding downstream 382867 10127196 ~ 10157548 (-)
CI01000013_10037048_10083444 PCLOB coding downstream 456971 10037048 ~ 10083444 (-)
CI01000013_10014588_10020597 NA coding downstream 519818 10014385 ~ 10020597 (-)
CI01000013_10560692_10562065 NA coding upstream 3609 10560297 ~ 10562280 (-)
CI01000013_10564288_10569141 NA coding upstream 7030 10563459 ~ 10569290 (-)
CI01000013_10597504_10610862 IMPDH1B, IMPDH1, IMPDH1A coding upstream 40816 10597504 ~ 10610862 (-)
CI01000013_10799938_10806858 PRPF18 coding upstream 241910 10798598 ~ 10806858 (-)
CI01000013_10828622_10836409 CPT1, CPT1B coding upstream 271843 10828531 ~ 10837146 (-)
G85186 NA non-coding downstream 6228 10527386 ~ 10534187 (-)
G85174 NA non-coding downstream 50206 10489814 ~ 10490209 (-)
G85173 NA non-coding downstream 51058 10488834 ~ 10489357 (-)
G85172 NA non-coding downstream 52792 10487359 ~ 10487623 (-)
G85171 NA non-coding downstream 54065 10486127 ~ 10486350 (-)
G85196 NA non-coding upstream 29683 10586371 ~ 10587130 (-)
G85201 NA non-coding upstream 64842 10621530 ~ 10684563 (-)
G85262 NA non-coding upstream 200124 10756812 ~ 10760487 (-)
G85311 NA non-coding upstream 217092 10773780 ~ 10776213 (-)
G85343 NA non-coding upstream 343799 10900487 ~ 10900711 (-)
G85170 NA other downstream 59715 10479861 ~ 10480700 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 1217571 9307036 ~ 9336077 (-)
CI01000013_07339918_07367774 NA other downstream 3158055 7339709 ~ 7367774 (-)
CI01000013_05883498_05884071 CHTF8 other downstream 4656043 5882049 ~ 5884071 (-)
G81547 NA other downstream 4796377 5739526 ~ 5744038 (-)
G85188 NA other upstream 35516 10592204 ~ 10595337 (-)
G85401 NA other upstream 478344 11035032 ~ 11035466 (-)
CI01000013_11596784_11604320 NA other upstream 1042372 11596688 ~ 11604865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location