CI01000013_10597504_10610862 (IMPDH1B, IMPDH1, IMPDH1A)


Basic Information

Item Value
gene id CI01000013_10597504_10610862
gene name IMPDH1B, IMPDH1, IMPDH1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10597504 ~ 10610862 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_10597504_10610862.mRNA
TTCACACACGGTTGACAGTCTCTGGACACACGGTTGCGCGTCTCACCATGAGACCCTGCTCCATCCAGAGCAGCTTCACACTCCTCAGAGCGCTGCTGTACGGGATGAGAGACTGCTTTTCTCCGCATTGATATGCACTTTAATAGCTATAGCCGTCATCATCATGGCTGATTACCTTATCAGTGGGGGAACTGGGTACGTTCCAGAAGATGGACTCACTGCCCAGCAGCTCTTTGCCATCGGTGATGGTCTCACATACAATGATTTCCTGATACTGCCTGGCTTTATTGACTTCACATCCGATGAAGTGGATTTGACCTCTGCTCTGACCCGGAAGATAACCCTGAAGACGCCACTCATTTCCTCTCCTATGGACACAGTCACAGAGTCCTCCATGGCCATCGCTATGGCTCTCATGGGTGGAATTGGAATCATTCATCACAACTGCACACCTGAGTTTCAGGCCAATGAGGTCCGGAAAGTCAAGAAATTTGAGCAGGGCTTCATTACGGACCCTGTAGTGATGAGTCCAAGGCACACTGTCGGTGATGTGTTTGAAGCAAAGGTACGGCACGGTTTCTCCGGCATCCCGGTTACCGAAACCGGCAAGATGGGAAGCAAGCTAGTGGGCATCGTTACATCACGAGACATCGACTTCCTGTCAGAGAAAGATTACGATAGGCCGCTGGAGGAGGCAATGACAAAACGAGAAGATTTAGTGGTTGCTCCAGCAGGTGTAACATTAAAAGAAGCAAATGACATCTTACAGCGCAGTAAAAAAGGTAAACTGCCTATAGTGAATGACAGCGATGAGCTCGTAGCTATAATAGCTCGTACTGATTTAAAGAAGAACAGAGACTATCCTCTAGCCTCCAAAGACTCTCGCAAACAGCTGCTGTGTGGCGCAGCCATCGGCACCCGAGAGGACGACAAGTACCGGCTGGACCTGCTCATGCAGGCTGGAGTGGACGTGATAGTTCTGGACTCTTCTCAGGGGAACTCAGTGTTTCAGATCAGTATGATCAACTACATCAAACAGAAATACCCAGACCTACAAGTGGTGGGAGGGAACGTGGTGACTGCTGCTCAAGCAAAGAATCTTATAGATGCAGGGGTTGATGCTTTACGAGTGGGCATGGGCTGCGGATCCATCTGCATCACACAGGAAGTGATGGCGTGTGGGAGACCGCAGGGCACGTCTGTGTATAAGGTGGCTGAGTACGCCCGGCGTTTTGGAGTTCCAGTCATTGCAGACGGTGGCATTCAGACGGTCGGGCACGTTGTGAAAGCCCTGGCGCTGGGAGCATCCACAGTGATGATGGGGTCATTGTTAGCAGCAACCACCGAAGCGCCTGGGGAGTATTTTTTCTCAGATGGCGTACGACTGAAGAAGTACCGTGGTATGGGCTCTTTGGACGCTATGGAGAAAAACAACAGCAGTCAGAAACGTTACTTCAGTGAAGGTGATAAAGTAAAGGTAGCTCAGGGAGTCTCTGGCTCAGTTCAGGATAAAGGCTCGATACACAAGTTTGTTCCATACCTCATCGCTGGAATTCAACATGGCTGTCAGGATATCGGTGCAAAGAGCCTGTCCATTCTGCGATCGATGATGTACTCCGGAGAGCTGAAGTTTGAGAAGAGGACAATGTCTGCTCAGGTTGAGGGCGGAGTTCATGGACTGCATTCATATTCTTTTGTGCCATGTAAGTACTCAGCCCTCATGTCTCTTATAATAACGTTGAGTTCTGGTGGAGGGGATTGTGTTGTAAACACTG

Function

symbol description
impdh1b Predicted to enable IMP dehydrogenase activity. Predicted to be involved in GTP biosynthetic process. Predicted to act upstream of or within GMP biosynthetic process. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in several structures, including digestive system; heart; nervous system; notochord; and pigment cell. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 11; retinitis pigmentosa; and retinitis pigmentosa 10. Orthologous to human IMPDH1 (inosine monophosphate dehydrogenase 1).
impdh1a Predicted to enable IMP dehydrogenase activity. Acts upstream of or within developmental pigmentation and eye development. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in brain; digestive system; heart; muscle; and sensory system. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 11; retinitis pigmentosa; and retinitis pigmentosa 10. Orthologous to human IMPDH1 (inosine monophosphate dehydrogenase 1).
impdh1 Enables DNA binding activity and identical protein binding activity. Predicted to be involved in 'de novo' XMP biosynthetic process and GTP biosynthetic process. Predicted to act upstream of or within lymphocyte proliferation and purine nucleotide biosynthetic process. Located in cytosol and nucleus. Implicated in Leber congenital amaurosis 11; retinitis pigmentosa; and retinitis pigmentosa 10.

NR:

description
novel protein similar to vertebrate IMP (inosine monophosphate) dehydrogenase 1 (IMPDH1)

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K00088 IMPDH, guaB; IMP dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_10597504_10610862.mRNA True 1775 mRNA 0.50 15 10597504 10610862

Neighbor

gene id symbol gene type direction distance location
CI01000013_10564288_10569141 NA coding downstream 28214 10563459 ~ 10569290 (-)
CI01000013_10560692_10562065 NA coding downstream 35224 10560297 ~ 10562280 (-)
CI01000013_10540473_10556642 NA coding downstream 40816 10540415 ~ 10556688 (-)
CI01000013_10338616_10372320 SEMA3D coding downstream 222348 10338538 ~ 10375156 (-)
CI01000013_10218387_10244139 SEMA3A, SEMA3AB coding downstream 353365 10218370 ~ 10244139 (-)
CI01000013_10799938_10806858 PRPF18 coding upstream 187736 10798598 ~ 10806858 (-)
CI01000013_10828622_10836409 CPT1, CPT1B coding upstream 217669 10828531 ~ 10837146 (-)
CI01000013_10838711_10841053 NA coding upstream 227635 10838497 ~ 10841564 (-)
CI01000013_10843295_10852581 CHKB coding upstream 232298 10843160 ~ 10852581 (-)
CI01000013_10892125_10899628 ARSA coding upstream 280852 10891714 ~ 10899628 (-)
G85196 NA non-coding downstream 10374 10586371 ~ 10587130 (-)
G85190 NA non-coding downstream 46234 10550928 ~ 10551270 (-)
G85186 NA non-coding downstream 63317 10527386 ~ 10534187 (-)
G85174 NA non-coding downstream 107295 10489814 ~ 10490209 (-)
G85173 NA non-coding downstream 108147 10488834 ~ 10489357 (-)
G85201 NA non-coding upstream 10668 10621530 ~ 10684563 (-)
G85262 NA non-coding upstream 145950 10756812 ~ 10760487 (-)
G85311 NA non-coding upstream 162918 10773780 ~ 10776213 (-)
G85343 NA non-coding upstream 289625 10900487 ~ 10900711 (-)
G85345 NA non-coding upstream 325519 10936381 ~ 10936656 (-)
G85188 NA other downstream 2167 10592204 ~ 10595337 (-)
G85170 NA other downstream 116804 10479861 ~ 10480700 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 1274660 9307036 ~ 9336077 (-)
CI01000013_07339918_07367774 NA other downstream 3215144 7339709 ~ 7367774 (-)
G85401 NA other upstream 424170 11035032 ~ 11035466 (-)
CI01000013_11596784_11604320 NA other upstream 988198 11596688 ~ 11604865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location