G85196


Basic Information

Item Value
gene id G85196
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10586371 ~ 10587130 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU96966
TACCTGTAGAAGCATCTGTCAAATCCTTTGTTTCCTCAGATGGCCACAGATAGTCTATCAGCCCTCTTGGCAAAGTGGTACCATCTAAGGTTCCTCTGGCATATGGTGTTTGGGTAGCACTAGATGACTTCCACAGTGTCTGATAGTTGCGAAATCTTGTTTCAGCATTAATCTGAGGTGTCTTTGTCTCTGTATTCCAAGCAATAGGTGTCTTTGACTCTGTACTCCAGGCCTGAGAAGATTTAAATGATTGGTCAGTATTTCCTTGCTTACTAAAATTTGGCCAATCAGAGGCTTCCGTTTGAGGTCCCTCTTCATCGTTCTGGATGTCTGAAGGAATTTCAGTCTCAGTGGAAGTCAAAGATTTGATCCATGGTGTTCTTGTGGCTGGAAGTCTTGACAAATGATCCTCCATTGTGACATAGGGGTTTTGTTCAGCTAAAAGGTCTACCTCAAGGTCTCTGCTAGTCACCTCTGAATGTAGTGCATTTGGGGATAAACTGAGAATGGCTGGAGTAGTCTTGTCCATTTGTCTCAGTAGGAACGTCCACGGTGAGCTGCTAGATGGTTCTGGGTCAGTGCTGGCCCAAGCTCTTTCATTTCTATTTAAAGATACAGCATACAAACTACAACACAGTGAGAAACTGAAGACCAGCAGTAACGCTTCTCTCTGAGGGGTCATGCTGACACTCCTCTAAAGATGTTACACCTCACAATGTCACCAGGCTGTCTCCATTTGACTTTCACATCTTGCGCAGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96966 True 760 lncRNA 0.44 1 10586371 10587130

Neighbor

gene id symbol gene type direction distance location
CI01000013_10564288_10569141 NA coding downstream 17081 10563459 ~ 10569290 (-)
CI01000013_10560692_10562065 NA coding downstream 24091 10560297 ~ 10562280 (-)
CI01000013_10540473_10556642 NA coding downstream 29683 10540415 ~ 10556688 (-)
CI01000013_10338616_10372320 SEMA3D coding downstream 211215 10338538 ~ 10375156 (-)
CI01000013_10218387_10244139 SEMA3A, SEMA3AB coding downstream 342232 10218370 ~ 10244139 (-)
CI01000013_10597504_10610862 IMPDH1B, IMPDH1, IMPDH1A coding upstream 10374 10597504 ~ 10610862 (-)
CI01000013_10799938_10806858 PRPF18 coding upstream 211468 10798598 ~ 10806858 (-)
CI01000013_10828622_10836409 CPT1, CPT1B coding upstream 241401 10828531 ~ 10837146 (-)
CI01000013_10838711_10841053 NA coding upstream 251367 10838497 ~ 10841564 (-)
CI01000013_10843295_10852581 CHKB coding upstream 256030 10843160 ~ 10852581 (-)
G85190 NA non-coding downstream 35101 10550928 ~ 10551270 (-)
G85186 NA non-coding downstream 52184 10527386 ~ 10534187 (-)
G85174 NA non-coding downstream 96162 10489814 ~ 10490209 (-)
G85173 NA non-coding downstream 97014 10488834 ~ 10489357 (-)
G85172 NA non-coding downstream 98748 10487359 ~ 10487623 (-)
G85201 NA non-coding upstream 34400 10621530 ~ 10684563 (-)
G85262 NA non-coding upstream 169682 10756812 ~ 10760487 (-)
G85311 NA non-coding upstream 186650 10773780 ~ 10776213 (-)
G85343 NA non-coding upstream 313357 10900487 ~ 10900711 (-)
G85345 NA non-coding upstream 349251 10936381 ~ 10936656 (-)
G85170 NA other downstream 105671 10479861 ~ 10480700 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 1263527 9307036 ~ 9336077 (-)
CI01000013_07339918_07367774 NA other downstream 3204011 7339709 ~ 7367774 (-)
CI01000013_05883498_05884071 CHTF8 other downstream 4701999 5882049 ~ 5884071 (-)
G85188 NA other upstream 5074 10592204 ~ 10595337 (-)
G85401 NA other upstream 447902 11035032 ~ 11035466 (-)
CI01000013_11596784_11604320 NA other upstream 1011930 11596688 ~ 11604865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G140271 NA non-coding NC_053125.1 CM020922.1 420894 ~ 421514 (+)
tiger barb (Puntius tetrazona) G128157 LOC107559445,LOC107665544,LOC107710380 non-coding NC_056716.1 CM032085.1 21161886 ~ 21162751 (+)