RNA id: TU96966


Basic Information

Item Value
RNA id TU96966
length 760
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G85196
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10586371 ~ 10587130 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACCTGTAGAAGCATCTGTCAAATCCTTTGTTTCCTCAGATGGCCACAGATAGTCTATCAGCCCTCTTGGCAAAGTGGTACCATCTAAGGTTCCTCTGGCATATGGTGTTTGGGTAGCACTAGATGACTTCCACAGTGTCTGATAGTTGCGAAATCTTGTTTCAGCATTAATCTGAGGTGTCTTTGTCTCTGTATTCCAAGCAATAGGTGTCTTTGACTCTGTACTCCAGGCCTGAGAAGATTTAAATGATTGGTCAGTATTTCCTTGCTTACTAAAATTTGGCCAATCAGAGGCTTCCGTTTGAGGTCCCTCTTCATCGTTCTGGATGTCTGAAGGAATTTCAGTCTCAGTGGAAGTCAAAGATTTGATCCATGGTGTTCTTGTGGCTGGAAGTCTTGACAAATGATCCTCCATTGTGACATAGGGGTTTTGTTCAGCTAAAAGGTCTACCTCAAGGTCTCTGCTAGTCACCTCTGAATGTAGTGCATTTGGGGATAAACTGAGAATGGCTGGAGTAGTCTTGTCCATTTGTCTCAGTAGGAACGTCCACGGTGAGCTGCTAGATGGTTCTGGGTCAGTGCTGGCCCAAGCTCTTTCATTTCTATTTAAAGATACAGCATACAAACTACAACACAGTGAGAAACTGAAGACCAGCAGTAACGCTTCTCTCTGAGGGGTCATGCTGACACTCCTCTAAAGATGTTACACCTCACAATGTCACCAGGCTGTCTCCATTTGACTTTCACATCTTGCGCAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96960 lncRNA downstream 35101 10550928 ~ 10551270 (-) True G85190
TU96953 lncRNA downstream 52184 10527386 ~ 10534187 (-) False G85186
TU96949 lncRNA downstream 52184 10528630 ~ 10534187 (-) False G85186
TU96952 lncRNA downstream 52184 10528630 ~ 10534187 (-) True G85186
TU96934 lncRNA downstream 96162 10489814 ~ 10490209 (-) True G85174
TU96971 lncRNA upstream 34400 10621530 ~ 10684563 (-) True G85201
TU97033 lncRNA upstream 169682 10756812 ~ 10760487 (-) True G85262
TU97089 lncRNA upstream 186650 10773780 ~ 10776213 (-) True G85311
TU97135 lncRNA upstream 313357 10900487 ~ 10900711 (-) True G85343
TU97137 lncRNA upstream 349251 10936381 ~ 10936656 (-) True G85345
CI01000013_10564288_10569141.mRNA mRNA downstream 17081 10563718 ~ 10569290 (-) False CI01000013_10564288_10569141
CI01000013_10560692_10562065.mRNA mRNA downstream 24091 10560297 ~ 10562280 (-) True CI01000013_10560692_10562065
CI01000013_10540473_10556642.mRNA mRNA downstream 29683 10540415 ~ 10556688 (-) True CI01000013_10540473_10556642
CI01000013_10338616_10372320.mRNA mRNA downstream 211215 10338538 ~ 10375156 (-) True CI01000013_10338616_10372320
CI01000013_10218387_10244139.mRNA mRNA downstream 342232 10218370 ~ 10244139 (-) True CI01000013_10218387_10244139
CI01000013_10597504_10610862.mRNA mRNA upstream 10374 10597504 ~ 10610862 (-) True CI01000013_10597504_10610862
CI01000013_10799938_10806858.mRNA mRNA upstream 211468 10798598 ~ 10806858 (-) True CI01000013_10799938_10806858
CI01000013_10828622_10836409.mRNA mRNA upstream 241401 10828531 ~ 10837146 (-) True CI01000013_10828622_10836409
CI01000013_10838711_10841053.mRNA mRNA upstream 251367 10838497 ~ 10841564 (-) True CI01000013_10838711_10841053
CI01000013_10843295_10852581.mRNA mRNA upstream 256030 10843160 ~ 10852581 (-) True CI01000013_10843295_10852581
TU96941 other downstream 13931 10572377 ~ 10572440 (-) True G85180
TU96930 other downstream 105671 10479861 ~ 10480700 (-) True G85170
TU95233 other downstream 1263527 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU94655 other downstream 3204011 7380297 ~ 7382360 (-) True G83206
TU94120 other downstream 4701999 5884149 ~ 5884372 (-) True G82727
TU96958 other upstream 5074 10592204 ~ 10595337 (-) True G85188
TU97193 other upstream 447902 11035032 ~ 11035466 (-) True G85401
TU97461 other upstream 1011930 11600778 ~ 11600941 (-) True G85628

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU189192 True 621 lncRNA 0.43 1 NC_053125.1 420894 ~ 421514 (+)
tiger barb (Puntius tetrazona) TU189192 True 866 lncRNA 0.45 1 NC_056716.1 21161886 ~ 21162751 (+)