G85262


Basic Information

Item Value
gene id G85262
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10756812 ~ 10760487 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU97033
GTAGCTAATACTGCTCTCTACTGGTAGAACAGTGACAACAGTTTACCTTAGAGATGCAGTTTACCTTATAGATGCAGGACTTTGCATTGAGGAAGAACAGCTCTATTGTGGCATTGTCCTTAAGGTAAGAGATACTTTCTATGTAGAACCTTACGCAGAAGTAAAGCACAATGGGTCCAGATTTCTTGGGAAACTCATGTTCCAGCACACGACGATCTAACTGCAACCAGCTGAAATGACCCGTCTCATCTACGTAAGAGATTCCAAAATATTCTTTCTCCTTCAGGTTGAAATGGGACGCTACCAGGTCTAGAAGATCCTTCGCCATTAGCTTTGGCTGAGAGAAAAAAAGAAAAAAAAAAAGTTAGGCTTCATCACAAAAGAGATCTTTTCATTCAGAATATACACACAGACAAAAACACCCGGATACACACACACACACAAGGTCAACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU97033 True 452 lncRNA 0.41 3 10756812 10760487

Neighbor

gene id symbol gene type direction distance location
CI01000013_10597504_10610862 IMPDH1B, IMPDH1, IMPDH1A coding downstream 145950 10597504 ~ 10610862 (-)
CI01000013_10564288_10569141 NA coding downstream 187522 10563459 ~ 10569290 (-)
CI01000013_10560692_10562065 NA coding downstream 194532 10560297 ~ 10562280 (-)
CI01000013_10540473_10556642 NA coding downstream 200124 10540415 ~ 10556688 (-)
CI01000013_10338616_10372320 SEMA3D coding downstream 381656 10338538 ~ 10375156 (-)
CI01000013_10799938_10806858 PRPF18 coding upstream 38111 10798598 ~ 10806858 (-)
CI01000013_10828622_10836409 CPT1, CPT1B coding upstream 68044 10828531 ~ 10837146 (-)
CI01000013_10838711_10841053 NA coding upstream 78010 10838497 ~ 10841564 (-)
CI01000013_10843295_10852581 CHKB coding upstream 82673 10843160 ~ 10852581 (-)
CI01000013_10892125_10899628 ARSA coding upstream 131227 10891714 ~ 10899628 (-)
G85201 NA non-coding downstream 72249 10621530 ~ 10684563 (-)
G85196 NA non-coding downstream 169682 10586371 ~ 10587130 (-)
G85190 NA non-coding downstream 205542 10550928 ~ 10551270 (-)
G85186 NA non-coding downstream 222625 10527386 ~ 10534187 (-)
G85174 NA non-coding downstream 266603 10489814 ~ 10490209 (-)
G85311 NA non-coding upstream 13293 10773780 ~ 10776213 (-)
G85343 NA non-coding upstream 140000 10900487 ~ 10900711 (-)
G85345 NA non-coding upstream 175894 10936381 ~ 10936656 (-)
G85346 NA non-coding upstream 178855 10939342 ~ 10939904 (-)
G85347 NA non-coding upstream 180073 10940560 ~ 10940887 (-)
G85188 NA other downstream 161475 10592204 ~ 10595337 (-)
G85170 NA other downstream 276112 10479861 ~ 10480700 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 1433968 9307036 ~ 9336077 (-)
CI01000013_07339918_07367774 NA other downstream 3374452 7339709 ~ 7367774 (-)
G85401 NA other upstream 274545 11035032 ~ 11035466 (-)
CI01000013_11596784_11604320 NA other upstream 838573 11596688 ~ 11604865 (-)

Expression


Co-expression Network