CI01000013_10828622_10836409 (CPT1, CPT1B)


Basic Information

Item Value
gene id CI01000013_10828622_10836409
gene name CPT1, CPT1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10828531 ~ 10837146 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_10828622_10836409.mRNA
ATATTCTATAAAACAGAATCTCCTCATTCATGCGTCAGATGTCACGTGTGTTTTGGCCAGTGTCACTGAAACTTCATCACATAAGAGCAAAGCCCTCCCAGATGTCCTATTAGGTTATTTCTGACTGTTCAACTTTGTCCCACTTCTTCTGGCTGCAGTCATATGACATGGAAAAAGAAACATAAGCTTGACAGTGTCACAGCATAACTGAACTCTGTGACTTCAGAGTGATACATGTCCTTTAGGTTCCTATATAGATTCTTCTAATAAACCCTTTTTAGCAGAATCTTACAGGAAACATATTAAAGGCACATTCTCCCTGGAGCAACCTGAGGTGAAATGGCACAGTGGTGATGGATTTTAATAATTCTCCAGTTCATAAATTTCCCCTGTCATGTTTCAACCTCAAGCTTTCAATAAGGACATAAATTCCTTGTATTTTATTACAATTTAAGGACTTTAAGAAGTTCTTTTTAATTATTATTAAGTTATATAATGTTTGTTTCCACAGTGACTTACAATACACTGATCACAGGAACATTCAACTTGAGGTCGTGTCACAGTGGTGATAATCCAATAGTCACCCTTAGCGTAACCTTTCACTTAGTAGCCCAGATTTTTCCACTAGACTAAACCAACCGAGCTAAAACGGCATATAAACATGGCATAAACTAAGTGTTTGCAAAATATATTTTAATATGGCCTTTCTCATTCCTCAGGCATTCTGAGCCTGTATAATGGCAGAGGCTCATCAGGCGGTGGCATTTCAGTTCACGGTCACACCGGATGGCATCGACCTACAGTTGAGCCGTGAGGTTCTCAAACACATCTACATATCTGGAGTAACATCATGGAAGAAACGTGCCATCCGCTTCAAGAACAGTGTTCTCACAGGTGTGTACCCCGCCAGTCCCTCCAGCTGGCTAATTGTAGTTATTGCGATAATGAGCACCATGTATGCCAGAATCGACCCCTCCATGGGCATGATTGACAGGATCAAGACATCTCTACCAGTGAGTGAATTTATGACCGTTCAGACTCAGATGGTGTTGAGTGCCATCCTGTTTGCCACAGGCCTGTGGTTATCTTTCATCTTCCTTCTGCGGTACATCCTGAAAGCTCTCCTGTCCTATCACGGCTGGATCTTTGAGTCACATGGCAAAATGAGCTTCTCTACTAAAGTCTGGCTGAGTCTCGTAAAGCTGTTGTCTGGTCGGCGGCCATTGCTCTACAGCTTTCAGGCATCTCTGCCCCATCTGCCAGTACCGAGCATTGATGACACAATCAGCAGGTATCTAGAATCAGTTCGACCTCTTCTAGATGATGAGCAATATAAACAGATGGAAATTGTTGCTAATGACTTCAAAAAGGACCCTGCCCCCAAATTCCAAAAACACCTCAAACTCAAATCCTGGTGGGCCACGAATTATGTGAGTGACTGGTGGGAGGAGTATATCTACCTGAGAGGACGCGACCCTATCATGGTCAACAGCAACTTTTACACGATGGACTTCCTCTATGTGATCCCAACACAGAGACAGGCTGCACGAGCAGGAAATGTAGTTCATGCCATGCTGCAGTATCGCCGAAAACTAGAGCGAGGAGAACTTACCCCGCTGAGAGCTCTTGGAATTGTCCCTATGTGCTCTTTTCAGTATGAGAGGATGTTCAACACCACTCGTATCCCTGGCATTGAGACTGATTTTGTGCAGCATCTGAAGGACAGGAAGCACTTGGTGGTGTACCATCGAGGCCGTTTCTTTAAGGTGTGGTTGTACTACGGTGGTCGCCACCTTTGGCCCTCAGAGCTTGAGTTGCAGTTTCAACGTATCCTGGATGACAAATCTGAACCTCAACCTGGAGAGCTCAAGCTCCCTTCACTGACTGCTGGAAACAGGGTTCCTTGGGCCAGGGCACGTTTAAAGTACTTCAGGGAGGGTGTCAACCGGGCGTCTCTGGAGGCCATTGAGACAGCTGCGTTTTTCCTGACCCTGGACGATGAGGCGCATGGATATGATCCAGAGAACATACGGTCCCTGGATCTCTACGCCAAATCTCTACTGCATGGAAAGTGCTATGACAGGTGGTTTGATAAATCCTTCACTTTGATTGTCTACAAGAATGGTCAAATGGGCGTCAACACTGAGCATTCATGGGCTGACTCCCCTATCATTGGACATATGTGGGAGTATATTTTGGCCACAGACTGTTTCCACCTGGGATATACTGCAGAGGGACATTGCAAAGGAGACATCAACAAAAGCCTGGTCCCCCCTACCAGACTACAGTGGGACATCCCAAAAGCGTGCCAGGAGATTATTGAAGGTTCGTACACGATTGCAAAAGGAATTGCTGATGATGTGGATTTCCACGGCTGCTTATTTAATGAATTTGGGAAGGGTCTGATAAAGAAATGCAGAACAAGTCCGGATGCTTTTATCCAGCTGGCACTGCAACTAGCTCAATACAGGGACAAGGGTGAATTCTGTCTGACTTATGAATCCTCCATGACACGCATGTTCCGTGAGGGCCGGACGGAAACCGTTCGCTCATGCACCTGCGAGTCCACTGCGTTTGTGAAAGCAATGGACGACGAGAGCATAGCGAATGAGCAGAGGTTAGAGCTCTTCAAAAAAGCTGCTGAAAAACATCAGAACATGTACCGCCTGGCTATGACAGGAGCCGGGATCGACCGGCATCTCTTCTGCCTCTATGTTGTGTCCAAAGTAATGGGCATAGACTCACCCTTCCTCAAACAGGTTTTGTCTGAGCCTTGGCGTCTCTCCACCAGTCAAACCCCTCAACAGCAGCTCAATCTCATCGACATTCAGAAGTTTCCCAAGTATGTGGGAGCAGGAGGCGGCTTTGGGCCTGTTGCTGATGACGGTTATGGTGTTTCTTACATCATTGTCGGTGAGAATCTCATTACATTCCACATTTCCAGCAAGTTCTCCAGCCCTGAGACGGACTCGTTCCGCTTTGGCCAGAATATCAGACAGGCCATGCTGGACATAAGAGCTCTATTCAACCTGAAAGAGAAGAAGATGTGACTCCTAAAAATGTGAATTTCAACTTCAAAGCTGACCCAAATTGAATCTGAACAATTAGGTTATGTTAGCATTACATAAACTTGTAAATATA

Function

symbol description
cpt1b Predicted to enable carnitine O-palmitoyltransferase activity. Acts upstream of or within response to (R)-carnitine and response to bacterium. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Is expressed in female organism and liver. Orthologous to human CPT1B (carnitine palmitoyltransferase 1B).
cpt1 Enables diacylglycerol cholinephosphotransferase activity. Involved in CDP-choline pathway. Located in Golgi apparatus and mitochondrial outer membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to several human genes including SELENOI (selenoprotein I).

NR:

description
carnitine palmitoyltransferase 1B

GO:

id name namespace
GO:0009617 response to bacterium biological_process

KEGG:

id description
K08765 CPT1A; carnitine O-palmitoyltransferase 1, liver isoform

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_10828622_10836409.mRNA True 3141 mRNA 0.46 18 10828531 10837146

Neighbor

gene id symbol gene type direction distance location
CI01000013_10799938_10806858 PRPF18 coding downstream 21673 10798598 ~ 10806858 (-)
CI01000013_10597504_10610862 IMPDH1B, IMPDH1, IMPDH1A coding downstream 217669 10597504 ~ 10610862 (-)
CI01000013_10564288_10569141 NA coding downstream 259241 10563459 ~ 10569290 (-)
CI01000013_10560692_10562065 NA coding downstream 266251 10560297 ~ 10562280 (-)
CI01000013_10540473_10556642 NA coding downstream 271843 10540415 ~ 10556688 (-)
CI01000013_10838711_10841053 NA coding upstream 1351 10838497 ~ 10841564 (-)
CI01000013_10843295_10852581 CHKB coding upstream 6014 10843160 ~ 10852581 (-)
CI01000013_10892125_10899628 ARSA coding upstream 54568 10891714 ~ 10899628 (-)
CI01000013_11262983_11266454 RABL2B coding upstream 425329 11262475 ~ 11266454 (-)
CI01000013_11276658_11278225 NA coding upstream 439488 11276634 ~ 11278730 (-)
G85311 NA non-coding downstream 52318 10773780 ~ 10776213 (-)
G85262 NA non-coding downstream 68044 10756812 ~ 10760487 (-)
G85201 NA non-coding downstream 143968 10621530 ~ 10684563 (-)
G85196 NA non-coding downstream 241401 10586371 ~ 10587130 (-)
G85190 NA non-coding downstream 277261 10550928 ~ 10551270 (-)
G85343 NA non-coding upstream 63341 10900487 ~ 10900711 (-)
G85345 NA non-coding upstream 99235 10936381 ~ 10936656 (-)
G85346 NA non-coding upstream 102196 10939342 ~ 10939904 (-)
G85347 NA non-coding upstream 103414 10940560 ~ 10940887 (-)
G85348 NA non-coding upstream 103935 10941081 ~ 10941502 (-)
G85188 NA other downstream 233194 10592204 ~ 10595337 (-)
G85170 NA other downstream 347831 10479861 ~ 10480700 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 1505687 9307036 ~ 9336077 (-)
CI01000013_07339918_07367774 NA other downstream 3446171 7339709 ~ 7367774 (-)
G85401 NA other upstream 197886 11035032 ~ 11035466 (-)
CI01000013_11596784_11604320 NA other upstream 761914 11596688 ~ 11604865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012609 BX276107.1 coding NC_007129.7 CM002902.2 8339596 ~ 8367566 (+)
bowfin (Amia calva) AMCG00006790 cpt1b,LOC100329197,LOC106573415 coding CM030134.1 CM030134.1 19971627 ~ 19981435 (-)