CI01000013_10127318_10157548 (SEMA3E)


Basic Information

Item Value
gene id CI01000013_10127318_10157548
gene name SEMA3E
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10127196 ~ 10157548 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_10127318_10157548.mRNA
AGTTATGGGAGCTGAACAGGACATGGCTGTTTCAGGCCGGAGAGGGGCGTCTGCAGCACTACAGTATGTTCCTGGACGAGACTCAGGAAAGGCTAATCGTCGGTGGAAAAGACATCCTGTACTCTCTCAATCTGGAGCGCATCACTGCCCCTCACAAAGAGATTCATTGGGCGAGCTCTGAAGATCAGGTGGAGGATTGTTTAATGCAGGGCAGAGAGAAGCCGGAGTGTGCAAACTACATTAAGCTGGTGCAGCATTATAACAGCACCCACCTGTTAGCATGTGGAACTGGAGCCTTCAGCCCAGTGTGTGCCTATATCAGAGTGGGTCAGGGAACACAGCTGTCAGTTTCAGGTGATCTCTCACCTAACATTTCAACCGTCCTAACTATACGCAACACGATCGCTAAACCTCATTCAAATCTGAACCATGTGTCCACCCACAAGCAGGAACGAGAGTTCAGTTTGGAGTCTGATCACATAGAGAGTGGCAAAGGAAGATGCCCATTCCATCCCAACAGCCCTTCAGTGTCCACTGTGTACCGAGGGGAGTTGTTTGTTGGCTTGTACACTGATTATTGGGAGAACGATGCCGCTCTATATCGTCTAGGCAACCACAGCTTCATTAGGACTGAAGTGGGTGACAGACAGCAGCTGAATGCCATACGGGAGCTCTGGCCTTCAGCCCAGATCGCTACGACTGAGCCCAATGAAAGTGATGCTTTTACCATGCGTATCACTGTAGCAAAGCTTGTGCCCTCATCGTGGGTCTACTACTTCTTCACAGAACGAGTGGCCAACATGGATGGAGGAAACAAAGCCGTCTACACCAGAGTGGGCAGAGTCTGTGCGAATGACCAGGGTGGTCAAAGAATGCTGGTAAACAGATGGAGCTCTTTCCTGAAGACTCGTTTGATCTGCTCAGTGGCTGGACCCAACGGCATTGACACACACTTTGATGAGCTCGAGGATGTGTTTGTGCTGCGGAAGAAAGATGAGAAAAATCCAGAGATCTTTGGTCTGTTCAGCACCACCAGCGCCGTGTTTAAAGGATACGCAGTGTGCATGTATAGCATGGAAGATGTCCGTGCAGCGTTTAACGGGCCTTTTGCACATCGGGAACGTTCTGACCACCACTGGAAGGTGTACGATGGCAGGGTCCCCTACCCGCGACCTGGATCGTGTGCCAGTAAGATAAACGGAGGCCAGTTCTCCAGTTCTAAGGCGTACCCAGACGAGGTTCTTCGTTTTGCGCGTTCCCATCCCCTCATGTTCCAGGCCGTGCAGCCCGTTCACAGGCGGCCCATTCTGCTGGACACCGAAGGAGGACGTAAACTCACACAGCTGGCGGTGGACCGGGTGGAAGCTGAGGACGGACACTACAATGTTCTCTTCATAGGGACTGATAACTCTGTAGTATTAAAAATGATCACAATCTACAACAAAGAAGCCGACACAGTTGAAGAGGTTCTTCTGGAGGAATTGCAGGTTTTCAAGGTCCCTGTTCCTATTACAGAGATCCTTGTCTCTACCAAAAGACAACAGCTGTATGTGGGCTCTGAGTTGGGTGTAACGCAGATCCGTGTGCACCAGTGTGGGCTGTACGGTTCCGCCTGCGCAGACTGCTGCCTGGCCAGAGACCCCTATTGTGCCTGGGATGGGTTCACGTGTTCCCGGTACTACCCCGCAGGCCTGTACACCAAAAGGCGCTTCAGACGGCAAGACGTCCGCCATGGCAACGCAGTTCAGCAGTGCAATGGGCTTCAGCTTAGTGAAGAACAAAGCATCTCAGAAAAGCTGGTATATGGTGTGGAGAACAACAGTACCCTACTGGAGTGCAGACCACGATCACTGCAGGCGTCTGTAACGTGGTACATTCAACATGGCGTGGATATGGAGGAGGTGAAAGGTGATGATCGTGTGATTCAAACCCCCCATGGCCTGTTGCTTCTTAAAATAGCGAAGGGAGATGCAGGAGTCTATGTGTGCCAGTCCACGGAGCACGGCTTTGTCCAGACGGTGGTGCGCATCACTTTGGAGGTGCTGGATGAGGGCAAAGTTGAGGGTCTATTACATAAAGGGGAGGAGGAGGAGGAAGGCGATTCTCTGCACAGACCTCCGCCCTGCCCCTTTCCCAGCCTACCCTCCGCCTCCTCAAAGCTCTGGTACAAGGATTTCATGCAGCTGATTGGCTACAGCAACTTCCAGCGGGTGGAGCAGTACTGTGAGAAGGTGTGGTGCGTATCAGACAGGAAGAGGAAGAAACTCAAGGGAATATCACCCAAATGGCGGTACACACCCGGGGCGGAGCAGCGGGCGAGAGCACGGGCACCTCGACAGACACAGTAAAGACTGTTAGATGAGACAACAAACCATTTAAACGCATGCCCCGTGCAGATGATCAAATATAGACATTTATTATTATATTATTATAATTTATTATAATTATTATTATTATATAAAATAATAAA

Function

symbol description
sema3e Enables neuropilin binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cardiovascular system; endoderm; mandibular arch skeleton; and primary motor neurons. Human ortholog(s) of this gene implicated in CHARGE syndrome. Orthologous to human SEMA3E (semaphorin 3E).

NR:

description
semaphorin 3E, partial

GO:

id name namespace
GO:0030335 positive regulation of cell migration biological_process

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_10127318_10157548.mRNA True 2470 mRNA 0.51 18 10127196 10157548

Neighbor

gene id symbol gene type direction distance location
CI01000013_10037048_10083444 PCLOB coding downstream 43752 10037048 ~ 10083444 (-)
CI01000013_10014588_10020597 NA coding downstream 106599 10014385 ~ 10020597 (-)
CI01000013_09930834_10008344 CACNA2D1 coding downstream 118690 9930537 ~ 10008506 (-)
CI01000013_09828630_09852321 NA coding downstream 274875 9827129 ~ 9852321 (-)
CI01000013_09734984_09737488 NA coding downstream 389708 9734887 ~ 9737488 (-)
CI01000013_10218387_10244139 SEMA3A, SEMA3AB coding upstream 60822 10218370 ~ 10244139 (-)
CI01000013_10338616_10372320 SEMA3D coding upstream 180990 10338538 ~ 10375156 (-)
CI01000013_10540473_10556642 NA coding upstream 382867 10540415 ~ 10556688 (-)
CI01000013_10560692_10562065 NA coding upstream 402749 10560297 ~ 10562280 (-)
CI01000013_10564288_10569141 NA coding upstream 406170 10563459 ~ 10569290 (-)
G84950 NA non-coding downstream 1448 10122882 ~ 10125748 (-)
G85018 NA non-coding downstream 15771 10111158 ~ 10111425 (-)
G84979 NA non-coding downstream 251832 9875120 ~ 9875364 (-)
G84976 NA non-coding downstream 260364 9866341 ~ 9866832 (-)
G84974 NA non-coding downstream 263575 9863400 ~ 9863621 (-)
G85039 NA non-coding upstream 27563 10185111 ~ 10185345 (-)
G85117 NA non-coding upstream 237237 10394785 ~ 10395051 (-)
G85120 NA non-coding upstream 242998 10400546 ~ 10401108 (-)
G85155 NA non-coding upstream 289369 10446917 ~ 10447299 (-)
G85069 NA non-coding upstream 314369 10471917 ~ 10472508 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 804352 9307036 ~ 9336077 (-)
CI01000013_07339918_07367774 NA other downstream 2744836 7339709 ~ 7367774 (-)
CI01000013_05883498_05884071 CHTF8 other downstream 4242824 5882049 ~ 5884071 (-)
G81547 NA other downstream 4383158 5739526 ~ 5744038 (-)
G81032 NA other downstream 5376635 4748809 ~ 4750561 (-)
G85170 NA other upstream 322313 10479861 ~ 10480700 (-)
G85188 NA other upstream 434656 10592204 ~ 10595337 (-)
G85401 NA other upstream 877484 11035032 ~ 11035466 (-)
CI01000013_11596784_11604320 NA other upstream 1441512 11596688 ~ 11604865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012621 sema3e coding NC_007129.7 CM002902.2 9493720 ~ 9576778 (+)
bowfin (Amia calva) AMCG00016983 NA coding CM030122.1 CM030122.1 39375260 ~ 39396596 (+)