CI01000013_09828630_09852321


Basic Information

Item Value
gene id CI01000013_09828630_09852321
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 9827129 ~ 9852321 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_09828630_09852321.mRNA
ATTTTATGAGAGAATGCATCATCGGCAATGGACTCAACTACAAAGGAAAGAGATCGGTGACCAAGAGTGGAGTCCAGTGCCAACTCTGGAATTCCAAAACTCCACATGAACACAAGCATGTTTTATCGGCTCAAGAAGCCAATGGACCTGAACGTTTTGAAATACCGAACAGGCCTCTAGTTTCTTACCCCAGAGGCATAAGCACCGAGATCTACGAGATAATTTATGTCGTAACCCAGACAACACCACAACAGGTCCTTGGTGCTTTACCATGGACCCCAGAATACGCCACCAGGACTGCAGTATCCCACAATGCTCGGAAGGCATGTTCCTTATCCATAGTGGAATGTATGACGTGTAATGGGGAAAGCTACCGCGGACCCATGGACCACACGAAGAGTGGCCGGGAATGCCAACGCTGGGACCTTGAGGAACCACATAGACACCTTTTCCACCCTAAAAGGTACCCCGATAAAGGTCTAAAGGACAACTACTGCAGGAACCCAGACGGGCGCCAGAGACCCTGGTGTTTCACCACCGATCCAAACACTCCATGGGAGTACTGTAACATCAAACAGTGCGATTCAGACAACGGCGGTGACGTTGACAACACAACAAGTTGTTTCCGTGGACGTGGAGAGGGTTATCGCGGAACGGTTGGCATCACCCCCGAGGGAGTGACCTGTCAGAGATGGGATGCCCAGTTTCCCCATCGACACTCTTATACACCACAGAATTATCATTGCAAGGATCTCCGGGAGAACTACTGTAGGAATCCTGATGGTCGTCATCTCCCATGGTGCTTCACGACTGACCCCAATGTACCTGTGGCGTTCTGCACGAACATTCCTCGCTGTGGAGTCCACACCCCTGAACCTGAAGAGTGCTATACGGGCATTGGTAACATGTACAATGGAAAACGGGCAAAAACTCGCTCAGGCATCCCCTGTGCTCCATGGAAAGACCACAGAGAAAGTAACGAAAGAGAAGTGGACTTGCTGACGGCTGAACAGGCAGGGAACTTCTGCAGAAACCCGGACAAGGACAAACACGGCCCGTGGTGTTATACCAACAGCTCATCCATCCCATGGGACTACTGCTCTCTCAAACCCTACGCTCCTAAGGCCCTTTTATTTACGACTGCAAACCACTGCAAAGTTGCAAATAAGTGGCTTGATTATAATGTACTGGTGAGCCCTCACATAACAATCTACCACAAAAAGATGAGGTTACAAAGACATCATGTTTTTTTCACAAGCAGGAGCACTCACTGGTGCGGAGGTTCTCTGGTCAGGGAGGAGTGGGTGCTGACAGACAGACAGTGCTTCTCGTCATGCGTGCCTGACCTATCAGAGTACAGAGTTTGGCTTGGTATATCTCATTTGAACGAATCGGGTGGGAATGACTTCCACAGACAGGAGAGGAGAATCTCGCACGTCATCTGTGGTCCGGAAGGCTCTAGTCTCGCCCTTCTCCGACTGACTCAACCAGCACTTATAAGAGAGCGTGTCAGAATTATTCAGCTGCCTGTGGCTGACTGCAGCATTCAGGAGGACACCATATGCTCTGTGTACGGCTGGGGTGAAACCAAAGGCACTGGACATGAGGGAACATTGAAAAGGGTTCATCTGCCCATAGTGGGCAACGAACGATGCCAGCAGCTTCACAAAGGAACTCTTCCAATAAATAGTTCTAAACTGTGTGCTGGTGGCAGAAGGGATGAAGGAGTGTGTGAGAAAGACTATGGTGGCCCTCTAATATGCCAAGAGAGTAACAGTAAAGTCATTGTTGGCGTGAGCATAAACGGCAGAGGATGTGCCCGACACAACCGACCAGCCATTTTCGTGAATGTGGCCTTCTATGCTGGATGGATTCATAAGGTGTTCAAAAATTATCCAAACTCAGAACTAAACAACTGATGAACAACATTTTAAGATCACATGACCATTATCGAACATATGATCTGATATGCAACATCAAAAATACAGAATCTCCATAAATCCATCAGCTTATTTCTTGATTTAAGGATCATCTGAAGAGCTCTTTTTGAAAAAGTTCTTCAGAACTTTCCCAGCTTGGCCATGAAACATATATTCAGAAACTACTCAAAGAGCTAAAACTGAGGCTGAAACCATTGCTCTGAATTCAAGCAATTTGTACACCTAATAATGCCAGAACCGCAGAGCAAGGCGCTGGAAGACAGAGTCTCTAAAGGCTACATTCGCAACTAGACATACGGAAAGATAAAGACTACTGGACCAAAGTGTGGACGAGCAGCCAGAATCTGTTTCAAGAATCAATAGCAATCCCTGGCCTCCAACCAAAAACCTCAAGTCCTCAAAGAGAAATCTTGCTGCAGTGTGCTTCAAAGCAATCATATGTATGTTCAGCCCACACATTACCCATCAAACTAACAATCTGGACTTCAGTTGGGATATTGGATTCAGAGACCGAACCCAAGTTTGAGTCTGGATTCAGACCAGGACTTGATATATGAATACAAACTCTTGAGATCCCAACAGGAATCTGCCATTCCCTCATTTAAAAGAGCTCAAAGCTGACCGACGTACCCGCTACATATTTCGGCCGCTCCTCATCGAGAAAGAGGGCTGTTATGATTATAAGTACTTGTTGATATAAAACTCTCATTAACAGTGTCATTCAAAAAGCCCCTCGATAAAGTATTAGCTGTTAGCTGTTAGCATAGCGTGTGTAGAATATCTTATGGGTAAAAAGTATACACAGAAGGCTTTTTTTTTTTGCGTTTATGCTCCTGATAATACTTGAAAACACACATGAGAGAGGTCACTGTGTCCCTCAATAACACCTCCTCATGTCGCCGTTACAGATTGTCGTTTCTTCAGCGTAGGTGTTTATATAGTCAAAGGTGTTCCATCCATTTCCAGTGTTGATATTTTGTCCACAAGTCTGAACGGAGATGACATGACCTGCTTGTAATGACATGCAGCAAAAAATCGTACTTGTCATAACATATCAGCATCTGAGGTTCCCATACACTATGTTTAGTTTAGAGCGGAATTCAGAGGAGGATTTGGAAATGTGTGTTGTAAATACTGTGGTCATGGGAGTGGGGTAATCACTCCCAGTTCTTTCGTAGGTCTCATAGACCTTTATAAGATGTTAGGGGCCTCCTCCATTCCAGTGCCGTTTTGTGTGCTCATTGGGTGGATTTATATATTTGTAAATATATCAGTATTAATTCCAAATGCACATTGTGTCAGTGTACGCTAAGTGTTGTGAAATACAAGAATGAGTGGGATATTTTATGTTCACTGAATCAAGCGTGTGTGATTGTGTGCAACGCTGCAAAGATGCATTGAAGCCGAAGCGTGCACCTCTGCAGGACAGAGAGCAAAGCGAGCCACATCTTGTATGCGTTCCTGTAGACATCGAAATAAA

Function

NR:

description
Hgfa protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_09828630_09852321.mRNA True 3420 mRNA 0.46 17 9827129 9852321

Neighbor

gene id symbol gene type direction distance location
CI01000013_09734984_09737488 NA coding downstream 89641 9734887 ~ 9737488 (-)
CI01000013_09444914_09445539 NA coding downstream 380576 9444425 ~ 9446553 (-)
CI01000013_09336832_09367107 MICAL3A, MICAL3 coding downstream 459825 9336572 ~ 9367304 (-)
CI01000013_09309438_09335834 MICAL3A coding downstream 491052 9307036 ~ 9336077 (-)
CI01000013_09293519_09305846 TTC38 coding downstream 521283 9293133 ~ 9305846 (-)
CI01000013_09930834_10008344 CACNA2D1 coding upstream 78216 9930537 ~ 10008506 (-)
CI01000013_10014588_10020597 NA coding upstream 162064 10014385 ~ 10020597 (-)
CI01000013_10037048_10083444 PCLOB coding upstream 184727 10037048 ~ 10083444 (-)
CI01000013_10127318_10157548 SEMA3E coding upstream 274875 10127196 ~ 10157548 (-)
CI01000013_10218387_10244139 SEMA3A, SEMA3AB coding upstream 366049 10218370 ~ 10244139 (-)
G84962 NA non-coding downstream 28453 9798472 ~ 9798676 (-)
G84957 NA non-coding downstream 40851 9786048 ~ 9786278 (-)
G84064 NA non-coding downstream 167392 9659425 ~ 9659737 (-)
G84049 NA non-coding downstream 200879 9626047 ~ 9626250 (-)
G84048 NA non-coding downstream 201367 9625528 ~ 9625762 (-)
G84974 NA non-coding upstream 11079 9863400 ~ 9863621 (-)
G84976 NA non-coding upstream 14020 9866341 ~ 9866832 (-)
G84979 NA non-coding upstream 22799 9875120 ~ 9875364 (-)
G85018 NA non-coding upstream 258837 10111158 ~ 10111425 (-)
G84950 NA non-coding upstream 270561 10122882 ~ 10125748 (-)
CI01000013_07339918_07367774 NA other downstream 2444769 7339709 ~ 7367774 (-)
CI01000013_05883498_05884071 CHTF8 other downstream 3942757 5882049 ~ 5884071 (-)
G81547 NA other downstream 4083091 5739526 ~ 5744038 (-)
G81032 NA other downstream 5076568 4748809 ~ 4750561 (-)
G85170 NA other upstream 627540 10479861 ~ 10480700 (-)
CI01000013_10564288_10569141 NA other upstream 711138 10563459 ~ 10569290 (-)
G85188 NA other upstream 739883 10592204 ~ 10595337 (-)
G85401 NA other upstream 1182711 11035032 ~ 11035466 (-)
CI01000013_11596784_11604320 NA other upstream 1746739 11596688 ~ 11604865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012627 hgfb coding NC_007129.7 CM002902.2 9996813 ~ 10062630 (+)