CI01000013_09930834_10008344 (CACNA2D1)


Basic Information

Item Value
gene id CI01000013_09930834_10008344
gene name CACNA2D1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 9930537 ~ 10008506 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_09930834_10008344.mRNA
AGTGACTTCTCAGAATTTTGTCTTATATAGAGCAGATCTGCAACCGTTAACAGTTTACAAGATTAACAGTTCTTTCTCATTTTCTCAAAAATAACATTTTGAGGGATTGCAGGCGCCTTCCATTTTGTACACATTGTGCTTTTATTTTGAAGTCCTTGCAACATGTTCTTAATTTGTATTTGTTCACTAATTGTTTCCAGGGAGGGCCACACAAACTTCAAAATAAAAGCACAATATTTACAAAACCACATCAAAAACAAACCTCTAAAACCATTTCTGAGGATAAAAGAATGGGTAGATCAACTGCAGCAGGAGCTGGTTTCTCTAGCAGACACAGCCAGCGCTGGGAATGATCTTAAACAGATCTTTATGGATAATCAGAATTATTTCACTGTGGAAACAAATAATGCGGCACAGCTTGTGGAAACAGCGGCACGGAATATAGAAAATTTTTTGAAGAAGCGAGCCACAGCTCTACAGATCTGTTTTATGAAAAGATCTCTTCTAAAAACTAGAGAAGATACTTTGGCAACCGCAGCAGAGATTTTCCAAATGGAGCATCAATGGAAAGATGAATTTGAAGAGGACGATATAGTTTACTTTAATGCCAAGGATAATCTTGATGCCAATGAAACAGAAGGAAGGAAAAACCGAATCAGACCTGAATTTAAAGAAGACCCGTCATTCAAAAACCGCTTCACCTCCTACAACCATACGGCTGTGCATATCCCCACGGACATATATGACGGTTCCACTATTGTGTTAAATGAGCTGAACTGGACTGAAGCGTTGGAAGACGTCTTTAAGAAAAACCGAGAAGAGGATCCAACGCTACTATGGCAAGTGTTTGGCAGCGCTACTGGATTAGCTCGCTATTACCCAGCCGGCAGAACACTGGTCGATTACTTTGTTACGGCCAAATCACAGTGTCTCAGACTATCCGCTGGCACTTGCAACTGTGATCCACTCACTAAATCTTCCCCTTGGATGGATGCCAGGAAAACACCCAGTAAAATCGACCTGTACGATGTGCGCCGACGACCTTGTTTAAAATTCTCCTTGAAAGAGATCCAGAATATTTCTTTCTTTGTATTCAGGTATGTTCAAGGTGCTGCTTCGCCCAAGGACATGCTGATTCTTGTTGATGCGAGTGGAAGTGTGTCTGGACTGACCCTTAAGCTGATTCGAACTTCTGTCAGTGAAATGCTGGAGACACTTTCCGATGATGATTATGTCAATGTCGTCCATTTTAACACAAAAGTGAATAACACAGCATGTTTCGACCACCTGGTTCAAGCTAACGTCCGCAATAAGAAGATCTTAAAAGATGCAGTGCAGAACATTACAGCCAAGGGCATCACCAACTACACCAAAGGCTTCGAATTTGCCTTCAATCAGCTCTCAAATCCAAACATCACCAGAGCAAACTGCAACAAGATTATAATGTTGTTTACTGATGGAGGCGAGGAGAGAGCAGAGGAAATCTTCAGCAGATACAACATTGACAAAAAGGTGCGTGTGTTCACGTTCTCTGTGGGTCAACACAACTATGACACAGGGCCAATAAAGTGGATGGCCTGTGCTAATAAAGGATATTTCTACGAAATCCCTTCCATTGGAGCCATCCGCATAAACACACAGGAATATCTAGATGTTTTGAGCAGGCCGATGGTCCTTGCAGATGCAAAACAAGTGCAGTGGACCAACGTTTACCTGGATGCTCTGGAGTTGGGCCTAGTCATCACAGGCACACTACCTGTGTTCAACAAGACCAAATCCAGGGAGGGCGGATCTCAGAACCAGCATCAGAACCAGTTGATTTTAGGAGTGATGGGGGTGGATGTGTCTCTCGACGATATCAAAAGATTGACGCCCCGCTTCACACTCAGAGGAATGTTTCCAGATGAACCGACACATTTGATTAACGCTAAGTGCTCGGGGGTGATTGACAGCTCGGGTCGGCGTTCTCGGGGGATATTAGACAGTACCCTGCTAATTGGTCCTAATGGATATTATTTCGCAATTGACCCAAACGGTTACGTGCTGCTCCATCCAAACCTGCAACCAAAGGAAGATCAAGCATCTGTGAATGATTCAGCTCATATCATTATTGACAAGTGTATCTGACCTCATATGTAAAGCTGTAGATTTAGAATGTATGAACATGCATTTGCGGTGTGTAAACAGCCGCTCATATAGCTTTTCCTTTGGATCGGAGCATACAGCCCCTCTGCTGGGTGAGCTTTGCACATAACCTTTGCAAATCGCCCAAAGTAATGCGCGTGCTTCTGGCAGCGGACCTGCATATATGTTTCTCAATGCAACTCGACTACACTTTTTGCATATCAGTCTATTTGCAGGTCCCTTTGATTCTGGTATCCCACCACACACATGGGCCGATCTGTATTTCATCTTTTAAATAAA

Function

symbol description
cacna2d1 Contributes to voltage-gated calcium channel activity involved in bundle of His cell action potential. Involved in several processes, including cardiac conduction; cellular response to amyloid-beta; and regulation of ion transmembrane transport. Located in extracellular exosome. Part of L-type voltage-gated calcium channel complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_09930834_10008344.mRNA True 2424 mRNA 0.43 23 9930537 10008506

Neighbor

gene id symbol gene type direction distance location
CI01000013_09828630_09852321 NA coding downstream 78216 9827129 ~ 9852321 (-)
CI01000013_09734984_09737488 NA coding downstream 193049 9734887 ~ 9737488 (-)
CI01000013_09444914_09445539 NA coding downstream 483984 9444425 ~ 9446553 (-)
CI01000013_09336832_09367107 MICAL3A, MICAL3 coding downstream 563233 9336572 ~ 9367304 (-)
CI01000013_09309438_09335834 MICAL3A coding downstream 594460 9307036 ~ 9336077 (-)
CI01000013_10014588_10020597 NA coding upstream 5879 10014385 ~ 10020597 (-)
CI01000013_10037048_10083444 PCLOB coding upstream 28542 10037048 ~ 10083444 (-)
CI01000013_10127318_10157548 SEMA3E coding upstream 118690 10127196 ~ 10157548 (-)
CI01000013_10218387_10244139 SEMA3A, SEMA3AB coding upstream 209864 10218370 ~ 10244139 (-)
CI01000013_10338616_10372320 SEMA3D coding upstream 330032 10338538 ~ 10375156 (-)
G84979 NA non-coding downstream 55173 9875120 ~ 9875364 (-)
G84976 NA non-coding downstream 63705 9866341 ~ 9866832 (-)
G84974 NA non-coding downstream 66916 9863400 ~ 9863621 (-)
G84962 NA non-coding downstream 131861 9798472 ~ 9798676 (-)
G84957 NA non-coding downstream 144259 9786048 ~ 9786278 (-)
G85018 NA non-coding upstream 102652 10111158 ~ 10111425 (-)
G84950 NA non-coding upstream 114376 10122882 ~ 10125748 (-)
G85039 NA non-coding upstream 176605 10185111 ~ 10185345 (-)
G85117 NA non-coding upstream 386279 10394785 ~ 10395051 (-)
G85120 NA non-coding upstream 392040 10400546 ~ 10401108 (-)
CI01000013_07339918_07367774 NA other downstream 2548177 7339709 ~ 7367774 (-)
CI01000013_05883498_05884071 CHTF8 other downstream 4046165 5882049 ~ 5884071 (-)
G81547 NA other downstream 4186499 5739526 ~ 5744038 (-)
G81032 NA other downstream 5179976 4748809 ~ 4750561 (-)
G85170 NA other upstream 471355 10479861 ~ 10480700 (-)
CI01000013_10564288_10569141 NA other upstream 554953 10563459 ~ 10569290 (-)
G85188 NA other upstream 583698 10592204 ~ 10595337 (-)
G85401 NA other upstream 1026526 11035032 ~ 11035466 (-)
CI01000013_11596784_11604320 NA other upstream 1590554 11596688 ~ 11604865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location