| Item | Value |
|---|---|
| gene id | CI01000013_10037048_10083444 |
| gene name | PCLOB |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 10037048 ~ 10083444 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| pclob | Predicted to be a structural constituent of presynaptic active zone. Predicted to be involved in presynaptic active zone assembly and protein localization to synapse. Predicted to act upstream of or within synapse assembly. Predicted to be located in cell projection; membrane; and presynaptic active zone. Predicted to be active in several cellular components, including GABA-ergic synapse; cytoskeleton of presynaptic active zone; and glutamatergic synapse. Is expressed in brain; cerebellum; hindbrain; and torus longitudinalis. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 3. Orthologous to human PCLO (piccolo presynaptic cytomatrix protein). |
| id | name | namespace |
|---|---|---|
| GO:0048786 | presynaptic active zone | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000013_10037048_10083444.mRNA | True | 12225 | mRNA | 0.45 | 21 | 10037048 | 10083444 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_10014588_10020597 | NA | coding | downstream | 16451 | 10014385 ~ 10020597 (-) |
| CI01000013_09930834_10008344 | CACNA2D1 | coding | downstream | 28542 | 9930537 ~ 10008506 (-) |
| CI01000013_09828630_09852321 | NA | coding | downstream | 184727 | 9827129 ~ 9852321 (-) |
| CI01000013_09734984_09737488 | NA | coding | downstream | 299560 | 9734887 ~ 9737488 (-) |
| CI01000013_09444914_09445539 | NA | coding | downstream | 590495 | 9444425 ~ 9446553 (-) |
| CI01000013_10127318_10157548 | SEMA3E | coding | upstream | 43752 | 10127196 ~ 10157548 (-) |
| CI01000013_10218387_10244139 | SEMA3A, SEMA3AB | coding | upstream | 134926 | 10218370 ~ 10244139 (-) |
| CI01000013_10338616_10372320 | SEMA3D | coding | upstream | 255094 | 10338538 ~ 10375156 (-) |
| CI01000013_10540473_10556642 | NA | coding | upstream | 456971 | 10540415 ~ 10556688 (-) |
| CI01000013_10560692_10562065 | NA | coding | upstream | 476853 | 10560297 ~ 10562280 (-) |
| G84979 | NA | non-coding | downstream | 161684 | 9875120 ~ 9875364 (-) |
| G84976 | NA | non-coding | downstream | 170216 | 9866341 ~ 9866832 (-) |
| G84974 | NA | non-coding | downstream | 173427 | 9863400 ~ 9863621 (-) |
| G84962 | NA | non-coding | downstream | 238372 | 9798472 ~ 9798676 (-) |
| G84957 | NA | non-coding | downstream | 250770 | 9786048 ~ 9786278 (-) |
| G85018 | NA | non-coding | upstream | 27714 | 10111158 ~ 10111425 (-) |
| G84950 | NA | non-coding | upstream | 39438 | 10122882 ~ 10125748 (-) |
| G85039 | NA | non-coding | upstream | 101667 | 10185111 ~ 10185345 (-) |
| G85117 | NA | non-coding | upstream | 311341 | 10394785 ~ 10395051 (-) |
| G85120 | NA | non-coding | upstream | 317102 | 10400546 ~ 10401108 (-) |
| CI01000013_09309438_09335834 | MICAL3A | other | downstream | 714204 | 9307036 ~ 9336077 (-) |
| CI01000013_07339918_07367774 | NA | other | downstream | 2654688 | 7339709 ~ 7367774 (-) |
| CI01000013_05883498_05884071 | CHTF8 | other | downstream | 4152676 | 5882049 ~ 5884071 (-) |
| G81547 | NA | other | downstream | 4293010 | 5739526 ~ 5744038 (-) |
| G81032 | NA | other | downstream | 5286487 | 4748809 ~ 4750561 (-) |
| G85170 | NA | other | upstream | 396417 | 10479861 ~ 10480700 (-) |
| CI01000013_10564288_10569141 | NA | other | upstream | 480015 | 10563459 ~ 10569290 (-) |
| G85188 | NA | other | upstream | 508760 | 10592204 ~ 10595337 (-) |
| G85401 | NA | other | upstream | 951588 | 11035032 ~ 11035466 (-) |
| CI01000013_11596784_11604320 | NA | other | upstream | 1515616 | 11596688 ~ 11604865 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|