LOC103029150


Basic Information

Item Value
gene id LOC103029150
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 1603121 ~ 1614483 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU469037
GTAGACTTGCTTTACCTTGGTTCCAGCCATCACATCTCCACCTGCCCACTgcctgaaactgaaacaccatcACGTCCTGTGAAAAGGAGACAGGAACCAGGCAAGATGAAGGGCTTCACTGCACTACTTCTTCTAACAGTTTTTAGTGCGTTCCTCAGTGAAGCCGAAGCAAACccgtttgtttacaACTATGACAGGCTGAGGATTGGTGGCATTATCTTCACAGTCCTGCTGGTAATAGGAGCCATGTTCGTCCTGTTCTATGACAAATGTGGAAAAAAGAAGAACGATGATGAGACCAGCCAGATCTAAACAGCTCATGAGGATCCTATCAGTGTCGGCTTTTGGATTTGATAGTATGGGAAGTTCTCAGTACATTTTTGGATGAGACACTTGCTCTATCTGACTCATTAAAATAGtgctattttaaaattatacacATTTTACTCACCTCTATCTTTTGACAGTAGGTGAAGTAGggggggggggggggttggaaAACTGTCTCTTCCCTGTTCTCCTCTAAAGTGATTTATCTGAACTCTGGGAATCTGTTTGAGTGATTTTGCTGTACAAAGGCAGGGATAATAGCGGCCATGCGGAAAATCAGttgaaaataaaatctaatttggTCTGTATGCTCTGATGCTCTTTTCATAATCATTTGTTGGGATTAAGAACACAGCTTAAGTTTTCCAGAGAGTTTTTTCACAGGTTTGGTTCAGAAATTCATTAGACTTTTACAGTGTGATTTGAAACACTTGTAAATGTAACATCACAAAATTAAAGctgcattattatttaatcattgtTTGAGTGGGTTTttacagaatgtctcaactaattattatatttatgtct
>XR_001518499.2
CAAAGACAGAAATTAGTATTAGTAGACTTGCTTTACCTTGGTTCCAGCCATCACATCTCCACCTGCCCACTgcctgaaactgaaacaccatcACGTCCTGTGAAAAGGAGACAGGAACCAGGCAAGATGAAGGGCTTCACTGCACTACTTCTTCTAACAGTTTTTAGTGCGTTCCTCAGTGAAGCCGAAGCAAACccgtttgtttacaACTATGACAGGCTGAGGATTGGTGGCATTATCTTCACAGTCCTGCTGGTAATAGGAGCCATGTTCGTCCTGTTCTATGACAAATGTGGAAAAAAGAAGAACGATGATGAGACCAGCCAGATCTAAACAGCTCATGAGGATCCTATCAGTGTCGGCTTTTGGATTTGATAGTATGGGAAGTTCTCAGTACATTTTTGGATGAGACACTTGCTCTATCTGACTCATTAAAATAGtgctattttaaaattatacacATTTTACTCACCTCTATCTTTTGACAGTAGGTGAAGTAGGACTATTTTGATGCAGTCTAACAGAGCATCTGATgctttttggggggggggggggttggaaAACTGTCTCTTCCCTGTTCTCCTCTAAAGTGATTTATCTGAACTCTGGGAATCTGTTTGAGTGATTTTGCTGTACAAAGGCAGGGATAATAGCGGCCATGCGGAAAATCAGttgaaaataaaatctaatttggTCTGTATGCTCTGATGCTCTTTTCATAATCATTTGTTGGGATTAAGAACACAGCTTAAGTTTTCCAGAGAGTTTTTTCACAGGTTTGGTTCAGAAATTCATTAGACTTTTACAGTGTGATTTGAAACACTTGTAAATGTAACATCACAAAATTAAAGctgcattattatttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU469037 False 861 lncRNA 0.40 8 1603142 1614483
XR_001518499.2 True 867 lncRNA 0.40 7 1603121 1614427

Neighbor

gene id symbol gene type direction distance location
LOC103024311 hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding upstream 27951 1537652 ~ 1575170 (+)
LOC103028527 LOC108433864 coding upstream 82791 1496211 ~ 1520330 (+)
LOC103024618 LOC108433895,LOC108256293,LOC107665651,LOC107726673,LOC107666852 coding upstream 135410 1403373 ~ 1467711 (+)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding upstream 645455 898957 ~ 957666 (+)
LOC103036551 LOC103036551,LOC108433863 coding upstream 770524 829266 ~ 832597 (+)
LOC111192111 NA coding downstream 76635 1691118 ~ 1712141 (+)
LOC103030855 LOC103030855 coding downstream 119701 1734184 ~ 1769150 (+)
atp4a atp4a coding downstream 173615 1788098 ~ 1842914 (+)
LOC111192112 gapdhs,LOC107709572 coding downstream 231527 1846010 ~ 1864349 (+)
tmem147 tmem147,LOC106605633,LOC107666831 coding downstream 291283 1905766 ~ 1912235 (+)
G340819 NA non-coding upstream 111397 1480100 ~ 1491724 (+)
G340818 dnase2 non-coding upstream 124457 1474931 ~ 1478664 (+)
G340816 NA non-coding upstream 170862 1431612 ~ 1432259 (+)
G340804 NA non-coding upstream 279428 1323293 ~ 1323693 (+)
LOC111192115 NA non-coding upstream 426543 1174736 ~ 1176578 (+)
G340899 NA non-coding downstream 154797 1769280 ~ 1770070 (+)
G340908 NA non-coding downstream 168032 1782515 ~ 1782844 (+)
G340912 NA non-coding downstream 183874 1798357 ~ 1798883 (+)
G340918 NA non-coding downstream 275288 1889771 ~ 1889978 (+)
G340919 NA non-coding downstream 303321 1917804 ~ 1918225 (+)
G340657 NA other upstream 915895 625226 ~ 687226 (+)
tmem176b NA other upstream 1419941 161568 ~ 183180 (+)
G340490 NA other upstream 1479452 71821 ~ 123669 (+)
G340488 ubqln4 other upstream 1482777 117296 ~ 120344 (+)
mex3a mex3a,LOC107592477,LOC107592188,LOC107756899,LOC107688221 other upstream 1514586 51843 ~ 88535 (+)
LOC103029358 fxyd1,plm,LOC108433901,LOC108256298,LOC105891849,LOC107592153,LOC104945886 other downstream 1875 1616358 ~ 1652511 (+)
LOC103030002 NA other downstream 46500 1660983 ~ 1665911 (+)
G340904 NA other downstream 69059 1683542 ~ 1684918 (+)
G340921 NA other downstream 488497 2102980 ~ 2103427 (+)
oxr1 oxr1,LOC107592439 other downstream 1553900 3168383 ~ 3548017 (+)

Expression


Co-expression Network