G340804


Basic Information

Item Value
gene id G340804
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 1323293 ~ 1323693 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU468905
ttacagaaacagtaaaaacggactggctgagccctgtagcccgtggctgggctgtactgaagtagtgactgagtgaagagagcggggcttgtgctgctgctgctagtggttggatgaagaactgcagcttcatgtaatgagcagtttcaccagccatccacacacagctctgataaactgcttgttttaatagtgcacactgttgctaccaaaaaaagtcactagatggcattaccatatatatcttaataaataataataataatatttataatatttataataataataataataataataataataataataaatatattatttaaattttatgaggcataaaataataacaagaaaaaaaaacaagaaaatcgaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468905 True 380 lncRNA 0.33 2 1323293 1323693

Neighbor

gene id symbol gene type direction distance location
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding upstream 365627 898957 ~ 957666 (+)
LOC103036551 LOC103036551,LOC108433863 coding upstream 490696 829266 ~ 832597 (+)
LOC103026183 NA coding upstream 920490 398531 ~ 402803 (+)
LOC111192137 NA coding upstream 1113123 202287 ~ 210170 (+)
LOC111192132 NA coding upstream 1122508 191553 ~ 200785 (+)
LOC103024618 LOC108433895,LOC108256293,LOC107665651,LOC107726673,LOC107666852 coding downstream 79680 1403373 ~ 1467711 (+)
LOC103028527 LOC108433864 coding downstream 172518 1496211 ~ 1520330 (+)
LOC103024311 hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding downstream 213959 1537652 ~ 1575170 (+)
LOC111192111 NA coding downstream 367425 1691118 ~ 1712141 (+)
LOC103030855 LOC103030855 coding downstream 410491 1734184 ~ 1769150 (+)
LOC111192115 NA non-coding upstream 146715 1174736 ~ 1176578 (+)
G340705 rbm8a,LOC107671476 non-coding upstream 500461 815162 ~ 822832 (+)
G340698 NA non-coding upstream 588811 734269 ~ 734482 (+)
G340697 NA non-coding upstream 590145 731229 ~ 733148 (+)
G340691 NA non-coding upstream 604454 718510 ~ 718839 (+)
G340816 NA non-coding downstream 107919 1431612 ~ 1432259 (+)
G340818 dnase2 non-coding downstream 151238 1474931 ~ 1478664 (+)
G340819 NA non-coding downstream 156407 1480100 ~ 1491724 (+)
LOC103029150 NA non-coding downstream 279428 1603121 ~ 1614483 (+)
G340899 NA non-coding downstream 445587 1769280 ~ 1770070 (+)
G340657 NA other upstream 636067 625226 ~ 687226 (+)
tmem176b NA other upstream 1140113 161568 ~ 183180 (+)
G340490 NA other upstream 1199624 71821 ~ 123669 (+)
G340488 ubqln4 other upstream 1202949 117296 ~ 120344 (+)
mex3a mex3a,LOC107592477,LOC107592188,LOC107756899,LOC107688221 other upstream 1234758 51843 ~ 88535 (+)
LOC103029358 fxyd1,plm,LOC108433901,LOC108256298,LOC105891849,LOC107592153,LOC104945886 other downstream 292665 1616358 ~ 1652511 (+)
LOC103030002 NA other downstream 337290 1660983 ~ 1665911 (+)
G340904 NA other downstream 359849 1683542 ~ 1684918 (+)
G340921 NA other downstream 779287 2102980 ~ 2103427 (+)
oxr1 oxr1,LOC107592439 other downstream 1844690 3168383 ~ 3548017 (+)

Expression


Co-expression Network