tmem176b


Basic Information

Item Value
gene id tmem176b
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 161568 ~ 183180 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU468531
GAGGAAGTCAAAGAAACAGTGTGTCCTGTTTCACGCGCTGCGACTGAAGAAAAGAGGGAAAACCTGCGGATTAAATCACTGCGGGGACAAGATCTTCAAGATGTCGGTGACTATGACCAAGGCTGATGGGGTCACTGTGTTGACCGTGACCTCCAACCCCAAGAGCAGATGCCCCCTGCTCTGCCAGATTCTGGGCACTCTGTGCTGCAGCCCGTTCTACTTCGTGTCTGGGGGCCTGAAGCAGCAGCTGGGCAGCTCTCACACACTTCTGGGGACTCTACAGATCATGGTTGGAGTGATAACCATGGGTTTTGGGGGCATCGTTAGAAGTGTTGGCTGGTCCTGGTGGCTGTATGATGGTTGCTTTTGGATAGGTGCAGTGTTCATTGCAGCTGGCATTGTGTGCATCCTTGTGAAGAGGTTTCCCAGCCCGTGCCTGATCTGCTTTTCGATCCTGGTGAATTTAGCCAGTTTTGGAGTGGCTGTCACTGCTATTGTGTATTATTCGATGGAGTTGGATCGTATGGTTTGGAATTACAGCTGTGAACGAAATGAATGGA
>XM_007242162.2
ACATCAAAAGTGAAAGTGTTCGGGATTGAGGAAGTCAAAGAAACAGTGTGTCCTGTTTCACGCGCTGCGACTGAAGAAAAGAGGGAAAACCTGCGGATTAAATCACTGCGGGGACAAGATCTTCAAGATGTCGGTGACTATGACCAAGGCTGATGGGGTCACTGTGTTGACCGTGACCTCCAACCCCAAGAGCAGATGCCCCCTGCTCTGCCAGATTCTGGGCACTCTGTGCTGCAGCCCGTTCTACTTCGTGTCTGGGGGCCTGAAGCAGCAGCTGGGCAGCTCTCACACACTTCTGGGGACTCTACAGATCATGGTTGGAGTGATAACCATGGGTTTTGGGGGCATCGTTAGAAGTGTTGGCTGGTCCTGGTGGCTGTATGATGGTTGCTTTTGGATAGGTGCAGTGTTCATTGCAGCTGGCATTGTGTGCATCCTTGTGAAGAGGTTTCCCAGCCCGTGCCTGATCTGCTTTTCGATCCTGGTGAATTTAGCCAGTTTTGGAGTGGCTGTCACTGCTATTGTGTATTATTCGATGGAGTTGGATCGTATGGTTTGGAATTACAGCTGTGAACGAAATGAATGGAATGATGGATATCGCTATGGTACGACTACTACAGGCCCAACCACGGCAAATTCCTGGGCAGAATATGAAGAGAACTGCGAGAGATACAAGTACATGTTAAAGATGACTTACGGAGGAATGATCATCATGATGCTCATGTTATCCTTCCTTCTGGTTTGCGTCATGATCAGCTCGTGTGTTCTGAGTGTGAAGGCTCTGTGCAAGAACTACAAAGAAAACGAAATGGAGGATCCGGAGCTTCAGAAGCCTCTTATGGATGAAGTCCTTTCCAGCCCTGCATGTTAGAAACACTACAATACCCAGAGTTCTTATGAACAGAATGTATATCCACAACGATCTTTATGTTACTGTCCTGCATAATCAAATGTAATCCTACACCTAAATCAAATATTTCTGTATTCTCATATAGGAGGCATGTTTGATTGATTTTCATGTTACGACATCTATTATCACATATCTGTAACCTGACATATTTAGCCTTATCACATATCTGTAATCTGACATACATATCTAGCCTTATCATATATCTGTAAGCTGACATATCTTTTTATCCACACACTAATTAATTGTTTCTTTTGATGTGtagacataaataaaaacacaatgcgTGTTGAAAACAGTGCTGAAATTTAAGTAAgttaatagaaataaatagaaGTGAATGGAATGGTTTGGGGTGCTGGAGTTTCCCAATCCAGCATGAACCTCGAACACCCTGCATTATTAGTGTACAAAAGCGCCACTCAGTGGTTATAATCTTCATTTTGATCATATTAATGCTACAGTGGCACCTTATGGTTGTGAGCAGCATCAGTAGAACCTGTTGCCAAATGTCAGGTAAGTGCGGTAAGTGTCTCAGAGAATTTCCAATAAAGAGGAGAAAACC

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU468531 False 560 TUCP 0.51 5 161595 177269
XM_007242162.2 True 1472 mRNA 0.43 7 161568 183180

Neighbor

gene id symbol gene type direction distance location
LOC111192126 NA coding upstream 731 149818 ~ 160837 (+)
LOC103041431 NA coding upstream 14922 131229 ~ 146646 (+)
LOC103043481 LOC108433856 coding upstream 154246 63 ~ 7322 (+)
LOC111192132 NA coding downstream 8373 191553 ~ 200785 (+)
LOC111192137 NA coding downstream 19107 202287 ~ 210170 (+)
LOC103026183 NA coding downstream 215351 398531 ~ 402803 (+)
LOC103036551 LOC103036551,LOC108433863 coding downstream 646086 829266 ~ 832597 (+)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding downstream 715777 898957 ~ 957666 (+)
G340489 lamtor2,LOC107592476,LOC107688283 non-coding upstream 50477 104345 ~ 111091 (+)
G340496 NA non-coding upstream 68535 90533 ~ 93033 (+)
G340578 NA non-coding downstream 142490 325670 ~ 340931 (+)
G340580 LOC108433880,LOC108256188 non-coding downstream 143613 326793 ~ 349692 (+)
G340645 NA non-coding downstream 290670 473850 ~ 474075 (+)
G340647 NA non-coding downstream 316977 500157 ~ 500498 (+)
G340649 NA non-coding downstream 353891 537071 ~ 543455 (+)
G340490 NA other upstream 37899 71821 ~ 123669 (+)
G340488 ubqln4 other upstream 41224 117296 ~ 120344 (+)
mex3a mex3a,LOC107592477,LOC107592188,LOC107756899,LOC107688221 other upstream 73033 51843 ~ 88535 (+)
G340657 NA other downstream 442046 625226 ~ 687226 (+)
LOC103029358 fxyd1,plm,LOC108433901,LOC108256298,LOC105891849,LOC107592153,LOC104945886 other downstream 1433178 1616358 ~ 1652511 (+)
LOC103030002 NA other downstream 1477803 1660983 ~ 1665911 (+)
G340904 NA other downstream 1500362 1683542 ~ 1684918 (+)
G340921 NA other downstream 1919800 2102980 ~ 2103427 (+)

Expression


Co-expression Network