LOC103026183


Basic Information

Item Value
gene id LOC103026183
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 398531 ~ 402803 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007242199.2
CGGAGCGTTTTGGACTGAAGCGCcggcatcgttgctaggttacctgtaagCATAAGAACGGCACCtgtagaacgcctctcagccaatcagattgcagGTTCGGAATGTTGATGACGTCACTGCGCTGATAATGTCAACATGCTTATCTGAGGCTCCTCAGCCAGAGCTGATCATTCTGCAGTAATAGAGGAGCTGATGGATGAAACACCAGAAATCACAGAGGGAACCAGCAGCATGCAGCCACCCTATCAGAAGAAGGAGCAGCGGTTTAAATCAAGCTcaaacactcagacacacacatcaCAATCATATCTACTTACAGTAGAACATGATGAAGATGATCGTGTCACTGTTTTAAGTTTGAGTTTATTACAGAGATCTCCTTCTCAGATGACGAAGGTAAGTGAGGAGCTGAGACTGATAGACctggaggaggaagagcaggaggaGAAAATACAGATGGAGGCCGATGCTAAAGCTGAGATGTTCATCAAAAGGGCAATTTCAGGAATACTGGAGAAACCAATTGGCACAAAAGTGGCTAACAGAGGCTCCATGCAGTACTCCCGGGGTAAAGTTGGAGAGAGTCTCTATCAGAGTAAGACAGAATTCGATCTGAGAGACCCTCACATGCAACAGATGCCCGTTACCTACAGCAGCCTGCACGACAAGCACTTGAAGAAGTTCTTCAACAAGCCTGGGAGAAGGAAGCAGCTCATCGACCAGGGCTTGATTACGGAGGATGGACATGTGCTGTGCTCCCAAAAGGAGTTTAACCAGTACATTGACTACCAGAAGTACATCAAACCTAAAAAGGGCGAGCTTCCTCTTCAAGATACGAGACCTCCATGTCAGATTACAAAGAAGATTGAGCTCACAGATCTggtggaagaagaagaggaggaagtcGTGGAGGAAGTCCTTACCAGCAGTCCTTCAAAAGATGACATCCTAGCTGGCTTAAAGAAGATCAAAATCTTCTTTAAGAAAGCATGGATGACAGTAAAACGGGCCTTTACCAGTAGAAGACGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCTAAATTCCCACCTTGTCTATGTTCTATCACTTCTTTTCTATATTAATGAAATGATTTGGTCAGTGTAATCCAGTAGGCTAATTTATGAGCTGAGCTCCATCGTTATAGATGTTGAGTTAATTTATATCAGTATATTTGTGCAGCACACTGAGCAGCAGACATCTCACTTCTCCCGTGACTTCGGTCGGTGATTCTAGCGCATATTAATAACGGCCCCCTGATGCCTCTAAATCATCTATAATTTGTGTGAAAGATGCAGCTAATTGCTAatagctgattggctgctgcttgtATTTAGAATTATCACTGAGCTCTGTGAGCAATATTTAGGCTGCAGAGCTAATATTAAATTTAGTTTAGAGGGGATATCTGGGCACAGGTAAAttcattatatattgtataagtaCTGTAGATGATTTgcaggcatcagggagccactatataaaaacactgtatatgtGGTCTTAAAGTGACGTCATATCATGAATTAGTCATATGTGGTttagaccagaggaggatgggtcccccttGTGAAGCCTGGTTCCTCCTGAGGTTTCTTCCTACAGGGGAGTTTTTTCCTCACCGCTGTCGCCTCGTGCTTGCTCACTTGGGGTTTTGTAAAAATCACTAGACTAATAAACTTGATGTGACGTCACTTTAGAGAAACCACAGCGAACTTAGCCCTGACCAAATCATTTCATTATATACTGTTCCTTTACCCCAAATCCAATCAAATCATGTAATGTTTAATTTCCAAATAAAttgcaaattataaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007242199.2 True 1843 mRNA 0.44 7 398531 402803

Neighbor

gene id symbol gene type direction distance location
LOC111192137 NA coding upstream 188361 202287 ~ 210170 (+)
LOC111192132 NA coding upstream 197746 191553 ~ 200785 (+)
LOC111192126 NA coding upstream 237694 149818 ~ 160837 (+)
LOC103041431 NA coding upstream 251885 131229 ~ 146646 (+)
LOC103043481 LOC108433856 coding upstream 391209 63 ~ 7322 (+)
LOC103036551 LOC103036551,LOC108433863 coding downstream 426463 829266 ~ 832597 (+)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding downstream 496154 898957 ~ 957666 (+)
LOC103024618 LOC108433895,LOC108256293,LOC107665651,LOC107726673,LOC107666852 coding downstream 1000570 1403373 ~ 1467711 (+)
LOC103028527 LOC108433864 coding downstream 1093408 1496211 ~ 1520330 (+)
LOC103024311 hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding downstream 1134849 1537652 ~ 1575170 (+)
G340580 LOC108433880,LOC108256188 non-coding upstream 48839 326793 ~ 349692 (+)
G340578 NA non-coding upstream 57600 325670 ~ 340931 (+)
G340489 lamtor2,LOC107592476,LOC107688283 non-coding upstream 287440 104345 ~ 111091 (+)
G340496 NA non-coding upstream 305498 90533 ~ 93033 (+)
G340645 NA non-coding downstream 71047 473850 ~ 474075 (+)
G340647 NA non-coding downstream 97354 500157 ~ 500498 (+)
G340649 NA non-coding downstream 134268 537071 ~ 543455 (+)
G340660 NA non-coding downstream 227065 629868 ~ 633351 (+)
G340672 NA non-coding downstream 303439 706242 ~ 707618 (+)
tmem176b NA other upstream 215351 161568 ~ 183180 (+)
G340490 NA other upstream 274862 71821 ~ 123669 (+)
G340488 ubqln4 other upstream 278187 117296 ~ 120344 (+)
mex3a mex3a,LOC107592477,LOC107592188,LOC107756899,LOC107688221 other upstream 309996 51843 ~ 88535 (+)
G340657 NA other downstream 222423 625226 ~ 687226 (+)
LOC103029358 fxyd1,plm,LOC108433901,LOC108256298,LOC105891849,LOC107592153,LOC104945886 other downstream 1213555 1616358 ~ 1652511 (+)
LOC103030002 NA other downstream 1258180 1660983 ~ 1665911 (+)
G340904 NA other downstream 1280739 1683542 ~ 1684918 (+)
G340921 NA other downstream 1700177 2102980 ~ 2103427 (+)

Expression


Co-expression Network