G340489 (lamtor2,LOC107592476,LOC107688283)


Basic Information

Item Value
gene id G340489
gene name lamtor2,LOC107592476,LOC107688283
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 104345 ~ 111091 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU468467
atttttcaccaaatattggcTTATTTAAGTTAACTGTTTGTTATTTGCAATCACACAAAAATACTGAGAGATCAGGGTTAACATAAAGTAAAACAGGCCTGTTAACAGGTTTCTGCTTAAAGATAACTCACATTCAGACTGCAGAGCTGCACTGACAGCATGTCCAAAGAtaagcatgaaaaaaacttagcaaataaataaagctgGAGAGTTATAGAGAGTATACAGACTGTCacaaaatcaagcaaaaaaattcAGACGCGTGAGAAAATCCCAGGAGAAACACCAATTTAAGATTCAGCTTTCTATGAAGCTGCCACTTGAGTTAATGGTTCCTGAAGGTACTCCACCAGGGCCTCAgcCTTTGCTTTAAGCATCCCGAAGCCCACGGTCTCCTTGGCGTACATGCACAGCAACAGGTTAGCGACCCGGGTAATGGCCACTCTGCCTTCCATACAGTCCATGAGAATAAACTTCAGCTTGTCCTCGTTGAAGGCTTGATGTCCGTTCTTATCATAGGCTGCCCAGATGTTGCTGGCAATAGCTGCAGTTACTCGCGCGTCTGTGTCTCCATAGCCAGAATAGGCCAGAAGTGACCCTTCATTATTTAGTAACGCGTGCTCTGGACTCCGTTAGTGTTGGCCTGGCTGAGCACCTGAGTTAAAGCTTTAGGTCTTAACATGATCAGAAAACCCAGTAAATCCCTCAAAATACTACAGAAATCAGGACTTTTACAGCAGCCAGCAttaacttacacacacacacacatcagctgACTAACACACTTCcgcaa

Function

symbol description
lamtor2 Predicted to contribute to guanyl-nucleotide exchange factor activity and molecular adaptor activity. Predicted to be involved in several processes, including cellular response to amino acid stimulus; positive regulation of TOR signaling; and regulation of cell growth. Predicted to be located in late endosome. Predicted to be part of Ragulator complex. Orthologous to human LAMTOR2 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 2).

NR:

description
PREDICTED: ragulator complex protein LAMTOR2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468467 True 793 lncRNA 0.43 4 104345 111091

Neighbor

gene id symbol gene type direction distance location
LOC103043481 LOC108433856 coding upstream 97023 63 ~ 7322 (+)
LOC103041431 NA coding downstream 20138 131229 ~ 146646 (+)
LOC111192126 NA coding downstream 38727 149818 ~ 160837 (+)
LOC111192132 NA coding downstream 80462 191553 ~ 200785 (+)
LOC111192137 NA coding downstream 91196 202287 ~ 210170 (+)
LOC103026183 NA coding downstream 287440 398531 ~ 402803 (+)
G340496 NA non-coding upstream 11312 90533 ~ 93033 (+)
G340578 NA non-coding downstream 214579 325670 ~ 340931 (+)
G340580 LOC108433880,LOC108256188 non-coding downstream 215702 326793 ~ 349692 (+)
G340645 NA non-coding downstream 362759 473850 ~ 474075 (+)
G340647 NA non-coding downstream 389066 500157 ~ 500498 (+)
G340649 NA non-coding downstream 425980 537071 ~ 543455 (+)
mex3a mex3a,LOC107592477,LOC107592188,LOC107756899,LOC107688221 other upstream 15810 51843 ~ 88535 (+)
G340488 ubqln4 other downstream 6205 117296 ~ 120344 (+)
tmem176b NA other downstream 50477 161568 ~ 183180 (+)
G340657 NA other downstream 514135 625226 ~ 687226 (+)
LOC103029358 fxyd1,plm,LOC108433901,LOC108256298,LOC105891849,LOC107592153,LOC104945886 other downstream 1505267 1616358 ~ 1652511 (+)
LOC103030002 NA other downstream 1549892 1660983 ~ 1665911 (+)

Expression


Co-expression Network