G340657


Basic Information

Item Value
gene id G340657
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 625226 ~ 687226 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU468689
cgcgaaaatggcatgaaatatcgtgatattattttagggtcatatcgcccacccctagtcccaatacttttgtctacaCACTGTCTGTAGTGATTCTTTGCTGAaacatttctccttttctgtaTCTCTCCTCAGATCATCTAAGAAGCTGGGCTCCAGCCAGGCGGCGAGCATGGAGAGCAGCTCTCTGACCGGCAGCCTGTCCCTGGCGTCTGACGTGCCTCACTGCCAGTGCTGCATCACGTACGAGGCCCGCCTGAAGCGCCTGTCCTGCGGGCACCTGTACTGCGACCCCTGCACCGATCAGATCGTCAACCTGGCGTTTGAAGACATCGAGGGTCTGGCGGAGTACCCCTGCCCCATGTGCAAATCCCTCCGCCAGCTCAGTGGCCTGCACACCTTCCCGTCCGGCAACATCACGCCCTACTGCTCGCCTTTCGGGAGCCAGAAGCagcgactggtggaggagagaggaggacagTGGGACTGAGGGACTCTGGGGGGGTGTGGAGGGATTGTGTTATAAAACGAGTATTAGTGAACTCAAGTGAACTGAAGATGGTATTTATCATCAGGATTCCGTATCAGTCACGAGTCATCCGTAATTTAAAACGTAGTCATTTCTGAAGCATTTTATCAAGTTATTCtaagttaattatttatataagagatgattcttcttcttcatcactGTGTTGTTGCACTAATGGGAGCAGCAGTTTTACATGCTTGCTTTAAAGCTGCGCTctctacatttttatttttaattgaaagcaTCTTTATTTATATCTTGTCTAAAAGCAGAGTACAgggtggtctggtaggtttgccGGATGTAATTGTTTTCTCTCTATATTGGGAAAGTATTTCATACATGAAGTAAATGAACTAAACAGtacactccaaaaaaaaaacacacagtactTTTCTTAATGCTTGATGCAATtgcacattctcaccagagaggtctccaaatccccaatttctgttgcttttttatttttatttatttatttttttaatataatttatttctaaattttgCTATTTCTCCCGCCAATTCAGCTGTTACTCAGCTATagatccccctatcactagtgatgccacaacacaaggagggtgaagaatagcacatgcttcctccaatacatgtgaagtcagactctgcctctttttaaacattgccgagtagcctcacagcgcacttggaggaaagcgcagcggctcagttctgatacatcagctcacagacatcacccttggagtgatgagggggggggaaagagcaccatctacccacccgagAAAGAGCAAGGTTAATTGTGCtttctcggggctctggcagctgatggcaagctgcataactgggattcgaaccagcgatctcccaatcatagtggcagcactttagactgctggaccactcgactGTTGATTTAAGTGAATTGCAACTTCCAAGAAGCTCCTTCAGAAACTTGAAGCTGACTGTGTTAGTTTgtttagtgaaaaaaatatttatttgtattttatttaaatacaaaaaaacaaaaaatatgattgttttaaatgatataACCATCACTGCCCACATACTTCTATGGGTCCTGTACATTGGCAGTCCATCCACTAGTGGGCATTTCAGAGTGTAATTCCCTGACAGTAACAACCATGGCATCGGTGGAGGAGGTTGTGATAATATAATTTCTATAACAAGACAGAAAAGCCGACAGAGCTGTAAATGTTTGTAATCGCtgtaaaaaagtttattctTTTTCATGTTTCGTTTGAACTATTGGTTCTATTCCATCCAAATATGTAAGATTTTAGATGTCAGATTATTTCAGATTATTGTGACAAATGTTTGTCACAGTTACcttattaaataacaatatatggACAGGACCTCACTAATTTTTGCTGATCAAGTAAGAAGATGACGCTGACAGTAAGAAGAGCCCATTAATatgattaaaatttaaaaatgcttaaatgtgtaggatatttaaaaaagttcataATGTGGATCAGGTTAGGCATGATGAGTCCACGGAAGCGGAAGTAAATAGCTGACTGACCACAAATTTTCAGTCAAATTTTTTGTATAAATTGATCAGTCATTGTaaaagactacagcagcagtaaaactgtagtgcacacacacacacacacacacactgacacacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468689 True 2195 TUCP 0.42 2 625226 687226

Neighbor

gene id symbol gene type direction distance location
LOC103026183 NA coding upstream 222423 398531 ~ 402803 (+)
LOC111192137 NA coding upstream 415056 202287 ~ 210170 (+)
LOC111192132 NA coding upstream 424441 191553 ~ 200785 (+)
LOC111192126 NA coding upstream 464389 149818 ~ 160837 (+)
LOC103041431 NA coding upstream 478580 131229 ~ 146646 (+)
LOC103036551 LOC103036551,LOC108433863 coding downstream 142040 829266 ~ 832597 (+)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding downstream 211731 898957 ~ 957666 (+)
LOC103024618 LOC108433895,LOC108256293,LOC107665651,LOC107726673,LOC107666852 coding downstream 716147 1403373 ~ 1467711 (+)
LOC103028527 LOC108433864 coding downstream 808985 1496211 ~ 1520330 (+)
LOC103024311 hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding downstream 850426 1537652 ~ 1575170 (+)
G340649 NA non-coding upstream 81771 537071 ~ 543455 (+)
G340647 NA non-coding upstream 124728 500157 ~ 500498 (+)
G340645 NA non-coding upstream 151151 473850 ~ 474075 (+)
G340580 LOC108433880,LOC108256188 non-coding upstream 275534 326793 ~ 349692 (+)
G340578 NA non-coding upstream 284295 325670 ~ 340931 (+)
G340672 NA non-coding downstream 19016 706242 ~ 707618 (+)
G340691 NA non-coding downstream 31284 718510 ~ 718839 (+)
G340697 NA non-coding downstream 44003 731229 ~ 733148 (+)
G340698 NA non-coding downstream 47043 734269 ~ 734482 (+)
G340705 rbm8a,LOC107671476 non-coding downstream 127936 815162 ~ 822832 (+)
tmem176b NA other upstream 442046 161568 ~ 183180 (+)
G340490 NA other upstream 501557 71821 ~ 123669 (+)
G340488 ubqln4 other upstream 504882 117296 ~ 120344 (+)
mex3a mex3a,LOC107592477,LOC107592188,LOC107756899,LOC107688221 other upstream 536691 51843 ~ 88535 (+)
LOC103029358 fxyd1,plm,LOC108433901,LOC108256298,LOC105891849,LOC107592153,LOC104945886 other downstream 929132 1616358 ~ 1652511 (+)
LOC103030002 NA other downstream 973757 1660983 ~ 1665911 (+)
G340904 NA other downstream 996316 1683542 ~ 1684918 (+)
G340921 NA other downstream 1415754 2102980 ~ 2103427 (+)
oxr1 oxr1,LOC107592439 other downstream 2481157 3168383 ~ 3548017 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G238315 LOC106581815 non-coding NC_048567.1 CM023221.2 24717738 ~ 24718558 (-)
striped catfish (Pangasianodon hypophthalmus) G325145 mtmr11 unknown NC_047616.1 CM018562.1 2088259 ~ 2097435 (-)