G340672


Basic Information

Item Value
gene id G340672
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 706242 ~ 707618 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU468710
CTTTATATCCGGCATCTGCCTGACTTTAAAGGTGGTTTTAGAGCCAGTCAGCATCGTGTCCGGTAAAAGCGTGTTTATTATAGGGAGAAATGTtcaattacaataataaaggGCTCAGTAGAGAGAGTGTAGGAGCTTTATCAGCTCTGTCAGacacatatttctctctgtACCGAGAGAGAGTTTACCGGAGAACCGCGGTCTGCCCCAGCCTCCCTCTCCACCCCAACCGGCCGTGGAGCCCCTCAGCGCGGCCACCGCTCGCCCGCATGTCGCCCTGTGGATCCCCCTCCTCAGCCCGCAGCTCAGTCCGCCTGTTCTCCCGGAGACACACCGCGGTGAACCCGCTCTGAGACTGAGACTGAGGCTCTGTACCGGTGGGATAGAGCAGCCTGACGGGCTTTGTTTATGGCCTCAGCATACTGAGATACAGAGAGCGACACTGTAGCGTTTCAcagcaacacaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468710 True 470 lncRNA 0.54 2 706242 707618

Neighbor

gene id symbol gene type direction distance location
LOC103026183 NA coding upstream 303439 398531 ~ 402803 (+)
LOC111192137 NA coding upstream 496072 202287 ~ 210170 (+)
LOC111192132 NA coding upstream 505457 191553 ~ 200785 (+)
LOC111192126 NA coding upstream 545405 149818 ~ 160837 (+)
LOC103041431 NA coding upstream 559596 131229 ~ 146646 (+)
LOC103036551 LOC103036551,LOC108433863 coding downstream 121648 829266 ~ 832597 (+)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding downstream 191339 898957 ~ 957666 (+)
LOC103024618 LOC108433895,LOC108256293,LOC107665651,LOC107726673,LOC107666852 coding downstream 695755 1403373 ~ 1467711 (+)
LOC103028527 LOC108433864 coding downstream 788593 1496211 ~ 1520330 (+)
LOC103024311 hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding downstream 830034 1537652 ~ 1575170 (+)
G340660 NA non-coding upstream 72891 629868 ~ 633351 (+)
G340649 NA non-coding upstream 162787 537071 ~ 543455 (+)
G340647 NA non-coding upstream 205744 500157 ~ 500498 (+)
G340645 NA non-coding upstream 232167 473850 ~ 474075 (+)
G340580 LOC108433880,LOC108256188 non-coding upstream 356550 326793 ~ 349692 (+)
G340691 NA non-coding downstream 10892 718510 ~ 718839 (+)
G340697 NA non-coding downstream 23611 731229 ~ 733148 (+)
G340698 NA non-coding downstream 26651 734269 ~ 734482 (+)
G340705 rbm8a,LOC107671476 non-coding downstream 107544 815162 ~ 822832 (+)
LOC111192115 NA non-coding downstream 467118 1174736 ~ 1176578 (+)
G340657 NA other upstream 19016 625226 ~ 687226 (+)
tmem176b NA other upstream 523062 161568 ~ 183180 (+)
G340490 NA other upstream 582573 71821 ~ 123669 (+)
G340488 ubqln4 other upstream 585898 117296 ~ 120344 (+)
mex3a mex3a,LOC107592477,LOC107592188,LOC107756899,LOC107688221 other upstream 617707 51843 ~ 88535 (+)
LOC103029358 fxyd1,plm,LOC108433901,LOC108256298,LOC105891849,LOC107592153,LOC104945886 other downstream 908740 1616358 ~ 1652511 (+)
LOC103030002 NA other downstream 953365 1660983 ~ 1665911 (+)
G340904 NA other downstream 975924 1683542 ~ 1684918 (+)
G340921 NA other downstream 1395362 2102980 ~ 2103427 (+)
oxr1 oxr1,LOC107592439 other downstream 2460765 3168383 ~ 3548017 (+)

Expression


Co-expression Network