LOC111192137


Basic Information

Item Value
gene id LOC111192137
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 202287 ~ 210170 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668744.1
TGATGAGCTGTGTCAGCTGGGCCTCTGCGAAACTGGTTTAGATTTTAAGGAAGTTTTCAGGGTGTATTTCCCCTGCTGAGAGAAAAGAGTAAACGTCTGGAGGTGTAATACTGCACTTAGCACTTAGAGAAGGATGTCGATGACTGTGTGTAACTCTAAGGCGGTGAATATGTTCACCTTGACCCCCAACCCCAAGAGCATATACCCACTGCTCTGCCAGCTTCTGTGCTGCAGGTCGTTCTACTCCGTGTTTGGAAGCCTGAAGCAGCACATGGCCAGCTTTCAGACAGTGCTGGGGACTCTACAGATCATGGTTGGATTAGTGAATGTGGGATATGGGGTCTTCATTCTATATCTTGGCAGTATGATTTGGAGCACCTGCATTTGGCTGGGAGCAGTGttttttgCATCTGGCATCTTATGTGTCATTGCAGACAAGTTTCCCAGCCCTTGCATGGTCAACCTTGCGGTCTTGGGGAATGTCCTCAGTTTTGGACTGTCTATAAATGCTATTGTGGTTTATTCAACGGATCTAGCACAGTTGCCTCGTGCTTTCAGCTGTGCTCTACCTGGCGACTCATATGGATACAGATATCGCTATTATGGGACTACACTAATTCCAACCACGATAGATGACAGAGTGGCAAACTGTGAGCGCTACAAGCACATGCTGGACTTTTCATTAGGAGGACTGGACGTCATGATGATCCTGCTGGGCGGAATCCAGCTTTGCCTCACGTTCAGCTCATGCCTTCTGTGTCTGAAGGCTTTGTGCATGAAGATGAAAGAAGAACAAACGGAGTATCCAGAGCTTTACAAGCCGCTCATGAAGAAAGCCCTTCCCAGCCCTGTGTGTTAGATAACATACAATGTCCagaattattatgattattgatGATAATTCATTAaga

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668744.1 True 911 mRNA 0.46 7 202287 210170

Neighbor

gene id symbol gene type direction distance location
LOC111192132 NA coding upstream 1502 191553 ~ 200785 (+)
LOC111192126 NA coding upstream 41450 149818 ~ 160837 (+)
LOC103041431 NA coding upstream 55641 131229 ~ 146646 (+)
LOC103043481 LOC108433856 coding upstream 194965 63 ~ 7322 (+)
LOC103026183 NA coding downstream 188361 398531 ~ 402803 (+)
LOC103036551 LOC103036551,LOC108433863 coding downstream 619096 829266 ~ 832597 (+)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding downstream 688787 898957 ~ 957666 (+)
LOC103024618 LOC108433895,LOC108256293,LOC107665651,LOC107726673,LOC107666852 coding downstream 1193203 1403373 ~ 1467711 (+)
LOC103028527 LOC108433864 coding downstream 1286041 1496211 ~ 1520330 (+)
G340489 lamtor2,LOC107592476,LOC107688283 non-coding upstream 91196 104345 ~ 111091 (+)
G340496 NA non-coding upstream 109254 90533 ~ 93033 (+)
G340578 NA non-coding downstream 115500 325670 ~ 340931 (+)
G340580 LOC108433880,LOC108256188 non-coding downstream 116623 326793 ~ 349692 (+)
G340645 NA non-coding downstream 263680 473850 ~ 474075 (+)
G340647 NA non-coding downstream 289987 500157 ~ 500498 (+)
G340649 NA non-coding downstream 326901 537071 ~ 543455 (+)
tmem176b NA other upstream 19107 161568 ~ 183180 (+)
G340490 NA other upstream 78618 71821 ~ 123669 (+)
G340488 ubqln4 other upstream 81943 117296 ~ 120344 (+)
mex3a mex3a,LOC107592477,LOC107592188,LOC107756899,LOC107688221 other upstream 113752 51843 ~ 88535 (+)
G340657 NA other downstream 415056 625226 ~ 687226 (+)
LOC103029358 fxyd1,plm,LOC108433901,LOC108256298,LOC105891849,LOC107592153,LOC104945886 other downstream 1406188 1616358 ~ 1652511 (+)
LOC103030002 NA other downstream 1450813 1660983 ~ 1665911 (+)
G340904 NA other downstream 1473372 1683542 ~ 1684918 (+)
G340921 NA other downstream 1892810 2102980 ~ 2103427 (+)

Expression


Co-expression Network