G340899


Basic Information

Item Value
gene id G340899
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 1769280 ~ 1770070 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU469067
gacaatgaaactgaaacacctgtcattttagtgtgggaggtttcatggctaaattggagcagcctggtggccaatcttcattaattgcacattgcaccagtaagagcagagtgtgaaggttcagttagcagggtaagagcacagtttcgctcgaaatattgtaatgcacacaacattatgggtgacataccagagttctaAAGAGGACAAGTTGTTGgggcacgtcttgctggcgcatctgtgaccaagacagcaagtctttgtgatgtatcaagagccacggtatccagggtaatgtcagcataccaccaagaaggagcaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcagatgctaacccggattgtatacaaaaaacataaaaccgtGGCGGcctgtttcattgtccaacccctgtagctcTTTTAATGTCAGAAAGCACTTTTACAGAGATCTGGGtctaaaaaagtgttaaagaaacACCCTCAGGACAAGAGGAAGTAACCatgggaggaaccaagactcaaaaatgGACTTATTAAGAACtcataaatgaatatatatagaGACGTGAGAAATGAATAAAGTGAGTCtcatactatatatagtatgttatgtattttagtacatgTGTGGGCTTTTTCAAAACAAAATCTCTTATTGCTGCACGGATCAGTCActaacagtcattttgcagaatttctgcaccctttgttcaattttaaatccactgaatgaaaaataaaaaactacacATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU469067 True 791 lncRNA 0.40 1 1769280 1770070

Neighbor

gene id symbol gene type direction distance location
LOC103030855 LOC103030855 coding upstream 130 1734184 ~ 1769150 (+)
LOC111192111 NA coding upstream 57139 1691118 ~ 1712141 (+)
LOC103024311 hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding upstream 194110 1537652 ~ 1575170 (+)
LOC103028527 LOC108433864 coding upstream 248950 1496211 ~ 1520330 (+)
LOC103024618 LOC108433895,LOC108256293,LOC107665651,LOC107726673,LOC107666852 coding upstream 301569 1403373 ~ 1467711 (+)
atp4a atp4a coding downstream 18028 1788098 ~ 1842914 (+)
LOC111192112 gapdhs,LOC107709572 coding downstream 75940 1846010 ~ 1864349 (+)
tmem147 tmem147,LOC106605633,LOC107666831 coding downstream 135696 1905766 ~ 1912235 (+)
rbm42 rbm42,LOC106605639 coding downstream 372621 2142691 ~ 2162315 (+)
LOC103022742 LOC108438098,LOC108256528 coding downstream 395823 2165893 ~ 2282746 (+)
LOC103029150 NA non-coding upstream 154797 1603121 ~ 1614483 (+)
G340819 NA non-coding upstream 277556 1480100 ~ 1491724 (+)
G340818 dnase2 non-coding upstream 290616 1474931 ~ 1478664 (+)
G340816 NA non-coding upstream 337021 1431612 ~ 1432259 (+)
G340804 NA non-coding upstream 445587 1323293 ~ 1323693 (+)
G340908 NA non-coding downstream 12445 1782515 ~ 1782844 (+)
G340912 NA non-coding downstream 28287 1798357 ~ 1798883 (+)
G340918 NA non-coding downstream 119701 1889771 ~ 1889978 (+)
G340919 NA non-coding downstream 147734 1917804 ~ 1918225 (+)
G341038 NA non-coding downstream 417344 2187414 ~ 2241249 (+)
G340904 NA other upstream 84362 1683542 ~ 1684918 (+)
LOC103030002 NA other upstream 103369 1660983 ~ 1665911 (+)
LOC103029358 fxyd1,plm,LOC108433901,LOC108256298,LOC105891849,LOC107592153,LOC104945886 other upstream 116769 1616358 ~ 1652511 (+)
G340657 NA other upstream 1082054 625226 ~ 687226 (+)
tmem176b NA other upstream 1586100 161568 ~ 183180 (+)
G340921 NA other downstream 332910 2102980 ~ 2103427 (+)
oxr1 oxr1,LOC107592439 other downstream 1398313 3168383 ~ 3548017 (+)
LOC107197730 NA other downstream 1580373 3350443 ~ 3355766 (+)
LOC103021382 LOC103021382 other downstream 1861254 3631324 ~ 3634237 (+)
LOC111192109 NA other downstream 1894208 3664278 ~ 3672016 (+)

Expression


Co-expression Network