CI01000016_04649660_04661928 (GSK3A, GSK3A.S, GSK3AA, GSK3AB)


Basic Information

Item Value
gene id CI01000016_04649660_04661928
gene name GSK3A, GSK3A.S, GSK3AA, GSK3AB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4649578 ~ 4663555 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04649660_04661928.mRNA
GTTTAAATTGACATATCCACTACGCGCCTGGGCCAGTCTACCGGCACTCTTTACCCCCGCTCTGGCACACACGAAACCCGATATGAGCGGCAGCGGGCGGCCCAGGACTAGCTCGTTTGCTGAGCCTCCGGGGGTCCCGGGAGCCGCTGCAGCCGCCGCCGGATCAGCCGTCGCCGGTGGAAGCACTTCAGGAAAGACGGGGGGCGCGCAGGCCTCAGCCGGGAGTTCGTCTGGTTTCGGAAACCTAAAGCTGGGCAGGGATAGTGGGAAAGTGACAACGGTAGTAGCCACACCAGGGCAGGGTCCCGACCGTCCTCAGGAGGTTTCATACACAGACATCAAGGTGATCGGGAATGGCTCGTTTGGAGTGGTGTACCAGGCTCGACTCATCGACAGCCAGGAGATGGTGGCTATAAAGAAGGTGCTTCAGGATAAGAGGTTTAAGAACCGTGAGCTACAGATAATGAGGAAGTTGGACCACTGTAATATTGTCAGGCTACGCTATTTCTTCTACTCCAGTGGAGAAAAGAAAGATGAAGTGTATCTAAATCTGGTGCTTGATTTTGTACCAGAAACCGTGTACAGGGTGGCACGCCACTTCAACAAGTCCAAGACCACCATCCCCATTATCTATGTCAAAGTGTATATGTATCAGTTATTTCGCAGTCTGGCGTATATTCATTCCCAAGGCGTCTGCCATAGAGACATCAAGCCACAGAATCTCCTGGTGGACCCAGACACAGCTGTACTCAAACTGTGTGACTTTGGCAGTGCAAAGCAGTTAGTTCGTGGGGAGCCCAATGTGTCATACATCTGTTCGCGGTATTACCGCGCTCCTGAGCTAATATTCGGAGCCACGGATTACACATCCAACATTGATATCTGGTCAGCCGGCTGTGTATTAGCAGAGCTGCTTTTGGGACAGCCCATATTCCCCGGTGACAGTGGAGTGGACCAGCTAGTGGAGATCATCAAGGTTTTGGGGACCCCCACAAGAGAACAGATCCGAGAGATGAACCCCAACTACACAGAGTTTAAATTCCCACAGATTAAAGCACACCCTTGGACAAAGGTGTTTAAGCCGAGGACCCCTCCTGAAGCTATCTCATTGTGTTCTCGTCTGTTGGAGTACACGCCGGTGACACGGCTCTCGCCGCTTGAGGCCTGTGCGCATGCTTTCTTTGATGAGCTTCGCCAGCCGAATGCACGTCTGCCTAATGGCCGAGAACTTCCCCAACTCTTCAACTTCAGCCCTGTGGAGCTGTCTATCCAACCACAGTTGAACTCCATTCTCATTCCTCCCCATGCTCGCTCGCAGACGACACCTGCCTCGCACGAGGGCGGTTCAGACGGTCCAGCCCAGTCTAGCTCAGCACCGGGACCCCTGAGCAACAACACCTAATTGTTCCCTCAGCATTACTTAGACACCATCACCCCTCTCTCCTCATCCCTTCTTTCTCATTCCTCTTTCCCAGCAACAGCTCCAAACAGTCTCTCTTGCACGCTCTCACAAACGCACTCACACTCGTCACCTCGTGTTATGTGTAATCATGTTCTCTCATGATGGTAGAAGTGTGTGTGATGCCCAGATTAATGACGTCGATCATCACAGGAGGTCGATTTAAATTCAGTATGATTATCAACCCATGATTGAGTTGATTGTCATCTTTAGGTTTGAACACTGGGAAGGGCCGGTTAGGGCATGTTTGCCCCCTAGTGGCAGGAAGAGCGCCGCACAGTTACTGCTCTCTGCCTGAGATACCATCCATTTGAAAGAATTTTAAAGAATGATACGTGATATCGAGCTCATTTAAATTTGTTTTTGCTCTTAAAATGATACATTTTAGCTTTCTTTAGGAGTTCTTGGACAAAATCAAGGACTGTGATGTGTTTTATAAAGCAGCGAGCGTGAGATGTCAGTGTTGTGTGTCCAGATGTGTGATGTTTCTCTTCGCCGAGACGAAAATGAGCAAAGAGTGTCTTAATATGTGCGTATGTCAATTTTAAGTAATCATTGCACACACTTTTGTGTTTTAATTTCTTTTAAGGAGAATATTTAGGTATTTGGAGAAGCTGAGACAGGGTTATCTGGGTTTTTTGTCAGTTTCAGTATAAAAATGTGCTCATTTTGTTAGTTTTTTGTGCATGTGCATGCACACACACACGTATAACGCATAGGTCAATACCATCAATAGCTGTGTTAGCCGTTCTGTTTGAATACAGAATTTGCATTATGGAGTCTACACTTGTGTGAGTGTTTCTATACATTGGCGTGCCCATTTAAATGTGGATTTAGTGGATATTCATCCAAATTACACATTGATACATGAGCCCACATGCACACCATGGACACTTAGCAAATGAGACTTTGAAACAGAGCTGTTTGTCTTTCCCTTCTTCCTTCCATCCTTTCTCTCCTCCTCTCTCATTGCTAATATGTAAATGCCATGTACCTTTTATTTTGTTATTTTTGTTATTGTTATTCTTATTCTATTGTCCTTGTAATTAGATTTTTCTCCTAGTGGAGCAGTGCTGGTATGAGCAGAAACCAGCCTTTCTTGGTCTCTCTATCTCTCTTTCTCTCTCTCGCCCGCCCTCCTTCCTTCTATCCCTTCATCATGCAACTGTATATAACATTTCATCCTCCCCGAGTCAAGGGAGGCAGACAAAACTGAACAAAATTTTGTTTTTACCTGATCTCAGTCTCTTTCTCTTACTCTCTCTCCTTTCCCGCCCACCCGCCTGCCTGCCCTCCCCCCTCCTCATCAGTGTTAATTCTGATCCTTTTATTTATTGTATTGCTGTCCGATTATGTTTTTAACAATCTGATGGGGGAGGGGTTTTGTGTGTGATGTCAATTGGTGTAACGTTCATATCTCAAACTCTGGAATATTGTCTGATGGAATGTTCTGGAAAGGGCAGGTACACACTACCACCACACACAGGCTGCTCGGCCCATCAGTGAAAAGATGAACGGTTAGGGAGAGAGAGGGAGAGATAAACAATGTTTTTGTTTGTTGGTATAAATA

Function

symbol description
gsk3ab Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within cardiac muscle cell development; dorsal/ventral pattern formation; and heart looping. Predicted to be active in axon; cytosol; and nucleus. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human GSK3A (glycogen synthase kinase 3 alpha).
gsk3aa Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in cell surface receptor signaling pathway; negative regulation of signal transduction; and regulation of neuron projection development. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in axon; cytosol; and nucleus. Is expressed in testis. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human GSK3A (glycogen synthase kinase 3 alpha).
gsk3a Enables protein kinase A catalytic subunit binding activity; protein serine/threonine kinase activity; and signaling receptor binding activity. Involved in several processes, including negative regulation of glucose import; negative regulation of glycogen synthase activity, transferring glucose-1-phosphate; and positive regulation of protein metabolic process. Predicted to be located in microtubule; mitochondrion; and postsynapse. Predicted to be part of beta-catenin destruction complex. Predicted to be active in axon; cytosol; and nucleus. Implicated in amyotrophic lateral sclerosis.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K03083 GSK3B; glycogen synthase kinase 3 beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04649660_04661928.mRNA True 3029 mRNA 0.47 10 4649578 4663555

Neighbor

gene id symbol gene type direction distance location
CI01000016_04590667_04633139 CIC, CICB coding upstream 15128 4590667 ~ 4634450 (+)
CI01000016_04557546_04579200 NA coding upstream 70077 4557546 ~ 4579501 (+)
CI01000016_04507602_04509233 NA coding upstream 140345 4506935 ~ 4509233 (+)
CI01000016_04491680_04506535 POU2F2A coding upstream 142772 4491376 ~ 4506806 (+)
CI01000016_04428669_04441464 DEDD1 coding upstream 208114 4428669 ~ 4441464 (+)
CI01000016_04666701_04684512 NA coding downstream 2367 4665922 ~ 4684837 (+)
CI01000016_04743905_04763216 GRIK5 coding downstream 80266 4743821 ~ 4763507 (+)
CI01000016_04770017_04795909 NA coding downstream 106462 4770017 ~ 4797509 (+)
CI01000016_04815074_04817608 NA coding downstream 151519 4815074 ~ 4817889 (+)
CI01000016_04826146_04828890 NA coding downstream 162533 4826088 ~ 4829158 (+)
G95489 NA non-coding upstream 95568 4547513 ~ 4554010 (+)
G95485 NA non-coding upstream 103506 4537680 ~ 4546072 (+)
G95673 NA non-coding upstream 132484 4516876 ~ 4517094 (+)
G95659 NA non-coding upstream 230964 4417888 ~ 4418614 (+)
G95692 NA non-coding downstream 150626 4814181 ~ 4927792 (+)
G95703 NA non-coding downstream 188486 4852041 ~ 4852964 (+)
CI01000016_04932388_04935392 NA non-coding downstream 270148 4931929 ~ 4935904 (+)
G95718 NA non-coding downstream 298695 4962250 ~ 4962586 (+)
G95751 NA non-coding downstream 316546 4980101 ~ 4980313 (+)
G95648 NA other upstream 375673 4272636 ~ 4273905 (+)
G95439 NA other upstream 785721 3862175 ~ 3862305 (+)
G93406 NA other upstream 3722046 905400 ~ 927532 (+)
CI01000016_04829592_04837305 NA other downstream 171003 4829592 ~ 4837457 (+)
G95792 NA other downstream 556325 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 742314 5405791 ~ 5407963 (+)
G96389 NA other downstream 2497086 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 3120510 7783987 ~ 7784996 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G80473 NA non-coding NC_056709.1 CM032078.1 9699451 ~ 9725103 (-)