CI01000016_04932388_04935392


Basic Information

Item Value
gene id CI01000016_04932388_04935392
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4931929 ~ 4935904 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04932388_04935392.mRNA
CTATAAAATAACATATAACTTTATAAACGCGAAAAGATCATTAAATGTTCTTCGTTTTTTAGCTTTCAGTGGTGCGAATGTATGTCAAACTTTTAAACATTACTCTCTTGACCGTAATAATCTTCGCAGAGATCTGTCGGTAAACTTTCTAAGCACGTTGCCAAGCAACGGAGAGTTAAAACTTAACGGCATTTGGACTCAGTTACAGGTACATACCGATTTCATGTGGTGGTTTGATATGTATACATAATATATGCATATTTGAAAATGAAGAAAGCATTTCATTCAACAGTTTGTCCACAAAGAATGCTCTTCATTTGATGTATGCTGCTAAACCGGAGTGGTGAACGTAACCACAATAAGCATGTGAGTACTAAATCAGATTACATGAATTATTTAATGCATGACAGACTTATTTTTACATTTTAATAACGTGTGTTTTATAGTCTTAACATGAAAATGAGCCACCAATCCTGCAAAAGCTTTCCACATAAACACAACTTGCCGAAGACATCCAATGACCACCATAGTATCAAAACCAAGTCTTCATGTCATGCAGCCAATGCTATTCACAACTGCAAACCATTGTGCAGTAGCAGCATGAACACAGATGTGCATTGCAACTTATCACATAAAGTAAGGCGTCTTAAAACCAGGAAGGAGAGGAATCAGATTCGAGGTCAAGAGAGAAACAAGTCTCACACATACTATCAGCACAGCAGAAAAGGAGGTGGTGAGAAAGCACAGTGCCGCAACATCCATCCACTGTCTTGTTCAAGAAAAGAGAGGACATTCGCTAAGCCATTCATTCCCCAGAAGCCAAGCATCATAACTGAAGGGCGCCTTACGTCCATCCGAGGCCTTTTCAGCCATGAGGTTAGGTCCATAGATATTGAGAGGGTGGTGAGCGAGCAAATAAAGAGAGATAAGCAGAGAAAAGAGCAAAGAAAAGCGTCTATGGCACACATTTCATCACCACTAACCCCCTCAGTACCTGATTCAGACCAGGACTGCACTCTCGATGAAGTACAGGAACCCCTCCAGGAACAAGAAAACAATACACCGCCACAAGTGAAGAGGAAGAAAAGTTCAAGAAAAGAGCTTATTGGAAAAAACAGTGGTATTCAGACTAATAGAGGAGTCACAGGACCTATGGGATTATCTAGAGAAGACGAGAGGAAGGTCAGAAATGCCAACACCAGGAAAGAAGATACTAATAGCAAAACAAGACAAGAAAGTCCAAGTAGCCCAAGAGAAACTGAACATATGGTTTTGTCATCCTTAGAAAATGAACCGGTTCATCAGTTATGCTCTACTCCAGTTGAAACTAATAAGAATAAGTCTGATATTTCAGAAACAGGCACTCTCAAGTCCCATGATGAAGGAAATGGTTTTATGAATATTCAGAGATTTGAGAAAACTTCTACAATGGTGGGATTCCCAAACATGGAAGTTCCGCAAATGTTGGAAAATCCGCAAACGTTAACCTCTCTGTCTGAACTGGACTCTGGGTCTGGTCAATTAGCAGATAATGTCAAGCAGAGGGAGCAAATGTCAGTATCTTGTAGGGAAGCAGTGAAAAGGCTGGCAACACGTTTGTGCCAGGCTTCAGAGCTCCATGTGCCAAGCCATCGGCCTCCCCTGCTGGCCGAGTGTAGAGAGACGCTAATGCAGACTTTACAAAAAAGACACAGTTTCCAGTTAGAGCACAACTTGCATAGGCTACTTTCATTCTTGAATGGGAAGCAAATGGCTTCTCAGCTTAGCTCAGGACAGAGACATGAAGATTGTTCATCTTTTAGCCATGCAGTGGAGAATGGGGATAGGTGTTACAGCAGGAACATGGATATTTCGACAGACAGTGCCATGCAGCATGATTACTTAAAAGAAGAAGTTAAGCTGGACTTGAACAGAGGAGTTTCAACCAAGAAACATTGGGTACAAGAGTGGAATGCCTTTTCCCCTCCATTCTCTCTAGAAGAACCACTACAATCACACACAGACATGTCTTTGCAGTTTGGCCAGTGGAGGGCAGATGAATTGTCTCAGGATTGCTTCAGAGCTCAGAATCATCCCAGCAGAGACCTCTTTAACCAGAGCCAGACCTTTACCAAGCATGCCGCCCCTATACTCCGAGCCCCCACTTGGCTTGATCATCCTGTGTACTCCTATTCCCAGCAGCAGTCACTGAGCACAGGAGAGAGTTTGAAAAGTGTACATTTAGATCTCTCCAGAATCTCTCAACAGTGCACAGAAGAAACAGATCTTAATTTTATATATGAGAGCAGAAAACAAAAAACACACGAACCATCTTTTGGAGGATCCAGATTCTGGTCTCATCAGCAACAAGTTCAGGATGAAAGAGAAAGATGGGCTCCCTTGTCATTCTCAGCATCCTATCTTTCAGAAGGCTTTCAGTACGAGCCCTTTGTTCGCTGTCCACATCCATTTAACATACAGCGCATGTCAGACCGTCTTGGTATGACTCACTGTCCCAGGTCAATTACACCATTTTATCCACCCCTTTACCTATAGAAAAGGCTGTTTGCCAAGGTTAGTCTCATCTAATCATCATTGGTGATGATATGGTCCAACTATGCATACATCTTACTGTCTTTGTACGAGTAACTTTTTTTTTTTTTTTGCATTACAGATTTACCTTTTTATATTTACAAAAATTGAAAGACCATCACCTCTACATGTGATTTGAGAGTTCAGTGTGCTTACATTATGATTTCTCTAATATGTTTGTATATACTACTAACACAAGTAGTGAGAGTGAAAGACACTTTTTAAGATCAAATCACTCTGTGCTGTATAAATATCAAAAGCCCTGCACAATAAGCTTCTTTTGTTCTCCTGCATTAATAGAGTAAATGTTTATTGTCTATCCACAACGATGCTGCTTATATATTTTATTTATTAATTTAGTCAAATTTCTTCTATAAGTATTTTTCTATTCTATATATCTTGACTGGGCTTTTTTTTTTCCTTAGATTTAGTATACTGTAAAAATAAGATGCATGTGATTTTGTTATATCCTTTTA
>TU108844
AGAGACATGAAGATTGTTCATCTTTTAGCCATGCAGTGGAGAATGGGGATAGGTGTTACAGCAGGAACATGGATATTTCGACAGACAGTGCCATGCAGCATGATTACTTAAAAGAAGAAGTTAAGCTGGACTTGAACAGAGGAGTTTCAACCAAGAAACATTGGGTACAAGAGTGGAATGCCTTTTCCCCTCCATTCTCTCTAGAAGAACCACTACAATCACACACAGACATGGTGAGTCAGTGAAATCAGAAACAAAGTTTAATGTCTTCCAACAAAAAAAGTAAAGAATCAAGTCCAAATAATACCAAAGTTGTAATAAACTAGACTATTAGAGAGGAAAGAACATTTGACACCTTGCAGTTCAGGACTCTATTTTGCATGTGAATTTGAATGTACAGTCTTTGCAGTTTGGCCAGTGGAGGGCAGATGAATTGTCTCAGGATTGCTTCAGAGCTCAGAATCATCCCAGCAGAGACCTCTTTAACCAGAGCCAGACCTTTACCAAGCATGCCGCCCCTATACTCCGAGCCCCCACTTGGCTTGATCATCCTGTGTACTCCTATTCCCAGCAGCAGTCACTGAGCACAGGAGAGAGTTTGAAAAGTGTACATTTAGATCTCTCCAGAATCTCTCAACAGTGCACAGAAGAAACAGATCTTAATTTTATATATGAGAGCAGAAAACAAAAAACACACGAACCATCTTTTGGAGGATCCAGATTCTGGTCTCATCAGCAACAAGTTCAGGATGAAAGAGAAAGATGGGCTCCCTTGTCATTCTCAGCATCCTATCTTTCAGAAGGCTTTCAGTACGAGCCCTTTGTTCGCTGTCCACATCCATTTAACATACAGCGCATGTCAGACCGTCTTGGTATGACTCACTGTCCCAGGTCAATTACACCATTTTATCCACCCCTTTACCTATAGAAAAGGCTGTTTGCCAAGGTTAGTCTCATCTAATCATCATTGGTGATGATATGGTCCAACTATGCATACATCTTACTGTCTTTGTACGAGTAACTTTTTTTTTTTTTTTGCATTACAGATTTACCTTTTTATATTTACAAAAATTGAAAGACCATCACCTCTACATGTGATTTGAGAGTTCAGTGTGCTTACATTATGATTTCTCTAATATGTTTGTATATACTACTAACACAAGTAGTGAGAGTGAAAGACACTTTTTAAGATCAAATCACTCTGTGCTGTATAAATATCAAAAGCCCTGCACAATAAGCTTCTTTTGTTCTCCTGCATTAATAGAGTAAATGTTTATTGTCTATCCACAACGAT

Function

NR:

description
novel protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04932388_04935392.mRNA False 3047 mRNA 0.40 3 4931929 4935904
TU108844 True 1294 lncRNA 0.39 2 4933703 4935758

Neighbor

gene id symbol gene type direction distance location
CI01000016_04911596_04920356 NA coding upstream 11110 4910169 ~ 4920819 (+)
CI01000016_04893170_04904103 NA coding upstream 27670 4893133 ~ 4904259 (+)
CI01000016_04850826_04860560 NA coding upstream 71244 4850315 ~ 4860685 (+)
CI01000016_04829592_04837305 NA coding upstream 94472 4829592 ~ 4837457 (+)
CI01000016_04826146_04828890 NA coding upstream 102771 4826088 ~ 4829158 (+)
CI01000016_04969263_04970446 CXCR3.2 coding downstream 32598 4968502 ~ 4970632 (+)
CI01000016_04981918_04985412 NA coding downstream 45706 4981610 ~ 4985635 (+)
CI01000016_05064542_05068162 NA coding downstream 127010 5062914 ~ 5068810 (+)
CI01000016_05100744_05111181 P3H3 coding downstream 164840 5100744 ~ 5111389 (+)
CI01000016_05117302_05122058 GNB3A, GNB3 coding downstream 179522 5115426 ~ 5122712 (+)
G95692 NA non-coding upstream 4137 4814181 ~ 4927792 (+)
G95703 NA non-coding upstream 78965 4852041 ~ 4852964 (+)
G95489 NA non-coding upstream 377919 4547513 ~ 4554010 (+)
G95485 NA non-coding upstream 385857 4537680 ~ 4546072 (+)
G95673 NA non-coding upstream 414835 4516876 ~ 4517094 (+)
G95718 NA non-coding downstream 26346 4962250 ~ 4962586 (+)
G95751 NA non-coding downstream 44197 4980101 ~ 4980313 (+)
G95726 NA non-coding downstream 121092 5056996 ~ 5088557 (+)
G95731 NA non-coding downstream 124267 5060171 ~ 5091009 (+)
G95785 NA non-coding downstream 188320 5124224 ~ 5127893 (+)
G95648 NA other upstream 658024 4272636 ~ 4273905 (+)
G95439 NA other upstream 1068072 3862175 ~ 3862305 (+)
G93406 NA other upstream 4004397 905400 ~ 927532 (+)
G95792 NA other downstream 283976 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 469965 5405791 ~ 5407963 (+)
G96389 NA other downstream 2224737 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2848161 7783987 ~ 7784996 (+)
G97824 NA other downstream 3078459 8014363 ~ 8015775 (+)

Expression


Co-expression Network