CI01000016_05117302_05122058 (GNB3A, GNB3)


Basic Information

Item Value
gene id CI01000016_05117302_05122058
gene name GNB3A, GNB3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5115426 ~ 5122712 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05117302_05122058.mRNA
ATATAAATACAGCGGAGAAACATCCAAGAGGAACAGGTAAGTGATGGAGGTTTTTTTACTTATTCACTTCTATATTTTGGGTTTGTTTGCTACTGTTTTAACTTATGAATATGGCAAAGTTAAGATTTGATAATGAATTCCACTCGGAAATGTCCAATTTAAGTCAGAACCAAACCATAACATAAGTGTCAATCAGTTTTATGCTTTAAATCCATAAAAATATTGGGTTTTTTGGTCTGTAGCAACAATTCTGTAATATTTTTCCTTTTCATTTTTTGGTAGTATAAATATTTTTTAAGATATCAAAAGAGACAAGCTATTGAATAAAAAATTATATCGGTACAAAATTGTAATGAATAATTTCTCTACTTAAATAATTTCCAATGACCTAACAGTAACTCATAGTATAATGAATGTAAATGATCAGCTAGACATTATAAATCATTTTTAGGTTCTGTATGAATAGTTACAGGACTTTTTTAACCATAAAAAGTTTGGAGATTACTGAATAATATTATGGAAGACTGTTCTTTCAACATAATTTGCTTTAAACTCAAATTCAAATGATAGCTAGGCCACACTTTCACACCCATTCCTAGCTTTCTCTTCTCTCTCTCTCTCTCCGTTTCTATCCATCTATCCCCCTCCCCATCTCTGCTGTAGCTCTTATCCAGATGCAAAGAGCAGTCAATAATCGGATGAGAGCAGATTTGATTCAAAAGGCCTCCCTTAAAATCTCAGCAGTGTGGATTTAAACTCACTCTCTCCTGCCTCTCTCTCTCTCATTATCTCTTTCTGGTTATGGCGTTTGGTGCTCACAGTCTTGTTGGTAATAACATTATCTAGCCGTTTTAATTCATACTGATGTCAAAAAATCCAGGTTCTAGATAGAGTTCTAGAACAGGGACTATTTATTGATGTCCTTAACAGGACAGCTCCCTCCCACCGGCCCACCTCTCTCCCATCCACACCCTTTATTCTCTCGCTTTCTCCTCAAACAAATTTTAGGCAAAAGTCATTTGGTCATGAGAGCTCGGGAGATACACAAAGATTCAAAAAAGAATTCAACAAAAGGAAATAGCTTACATTAATCTTCCTTTGCAAGGTAAGACATGATATTTAAACTTAAGAGGTATGCTTTATGACTCGCAAAAAAATATTTTCATTAAGACGACTGACAGCACACTAATTATAAAAGCAATTTGAGGTTAGCCATCCAAAATGAAGGGCAAAATTATTATAGATGACAATACTGAGAGAGTTTAACATCATCAATAATATATAACATGGATCTCAGTAATGTTTTCCGCAAAAAAAAAATAAAAATTTATTGTTTGAGGGCTCAAGAATATTACAAATTAAAGCAGTTGTAATGTGCGCATAGAGTCACACTTATCATTGTTAAATCCCTTTTATTTCATAGGAACAGTTGGACATACCCAAAAACAAATGTGCTGTAGATGTATATAATGTATTTATTAACTAAACTATCTATCTATATGATAGGTGTATGGATATTAGATAAAGCAGTTTCTTGTATGTCATTGTGCTTGACTCTGACTCATTGCGCCCTTGCATGTTTGTGGTGGTGGCACAAGTGAAATTTTGCATGCATCCTTATTTGTGAGGATTTGCAAACCAGGTCGAAGGGAGTTTGAATTGCAAATAGCTGTTGAAGGGGCAACTGCAGATATATTACAGTGAAAGCAACAACAACAAGCCTTTCCCACAAGCAGTAAAATAAATTGCACTGTCATGATTAATGAAACAATTAAATGTATATTCACATTTAGGAGTTTTCCCCAGCATTCTCTTGGCTCTACTGAGCTCACTTCCTGTCTGTATCTGTGGGTGACCGTGCCTGACAACCACTGCCATGGGTGAAATGGAGCAACTGCGAAAGGAGGCGGAGAGCCTGAAGGATGAAATCACTGCGGCTCGTAAAGCAGTGCAGGACCTCACACTGCAGGATCATGTGGCGGGGACAGCTGTTGTGGGACGTGTCCAGCTAAAGACCAGGAAGACATTGAGAGGACATCTGGCCAAAATCTATGCCATGCACTGGGGGACGGACTCAAAACTGTGTGTTAGTGCGTCTCAAGATGGTAAACTGATTGTATGGGACAGCTACACCACCAATAAGGTGCATGCAATCCCACTTAAGTCCTCATGGGTGATGACATGTTCGTACGCACCTTCAGGAAACATGGTGGCATGTGGAGGACTTGACAACATGTGCTCCATCTATAACCTGAAGGGCAAAGATGGTAACGTGAAGGTGATGCGTGAGCTCGCAGCACACACAGGGTACCTGTCCTGCTGCCGCTTCCTGAGCGACAGTGAGATCATCACCAGCTCTGGAGACTGTACCTGTCTTCTGTGGGACATTGAGACAGGAACAGAGAAGACTGTCTTCGCTGGCCATCTGGGAGACTGTATGTCTCTGGCTGTGTCCCCTGACTTCAACACTTTCATCTCAGGAGCTTGTGACTTCACAGCCAAACTGTGGGACATCCGTGACGGTCAGTGCAGACAGACCTTTGGAGGCCATGAGAGTGACATCAATGCCATTGGGTTTTTCCCCAATGGCAATGCAGTGATCACAGGTTCAGACGACGCTTCCTGCAAGCTGTATGACCTGCGTTCAGACCAGGAGCTCATCACGTACCAGGACTCCAGCATCATGTGCGGAGTGACTTCCATCGCTCCCTCCCTCTCTGGAAGACTCATCCTCGCTGGGTACGACGACTTCAACTGCAACATCTGGGACTCGCTTAAGGCGGAGAGAGTGGGAGTGTTGTCTGGTCATGACAACCGAGTGAGCTGTATCGGCGTGACACCTGATGGGATGGCCTGCTGCACAGGATCATGGGATAGCTTTCTGAAGATCTGGAACTAAAACGCTGTCTCAAAGAGAGGCAAAATCAGAATATGTCAAAGACAGGGTAAAATGTAAAGGGGACAATTGGAACAGGACTATGGGATATAGTTGTATAAGTAGGGAGGGAAAGAGATATGTTTGTTGTGCCGTCACAACGAGAAAGATTGTGAATAAGAAAACCTCATTTAGAGATGGGCTTGATCTGTAGAATAGTCTTGTCAAAGAAACCATGCAATAACAGAAAACTTGTTTTTTTCAGGGACTGCTAACTGCAAAAGTGGGCATTTACCAAGCCATGACCTATTTGGTGATTTGTGAGGTAATTTTTGGATAGGGTCATTAACACAAGGGTGTGTTACAGCATATTATCACTATAGCATATGAAATAAGTCTTTCAACACTAGTTGAATCACGCTTACTGATATCTAAATGCATCCTGTGCTATCAAACCTATATGACAGAGGTTGCCAAAATAGTTGCGCAAGATTGAGTATAAAATTTCAGTCTACACAGAATGACATTTTCACTTTTATAAAATGTGGTTTACAAACTATAGATTAAATGAGTTTTAGTGAGATTGTCTGATTGAACTTCTTTTGTTAAGTTTAGTGTTAGATTTTTTTGATAGTGCACTGATAGTGTCATGTTTTTTTTTCCTGCTTATTCAGGCCA

Function

symbol description
gnb3a Predicted to enable signaling receptor complex adaptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in cytoplasm. Is expressed in nervous system. Human ortholog(s) of this gene implicated in artery disease (multiple); congenital stationary night blindness 1H; familial hyperlipidemia; mental depression; and type 2 diabetes mellitus. Orthologous to human GNB3 (G protein subunit beta 3).
gnb3 Enables GTPase binding activity. Involved in several processes, including cell volume homeostasis; regulation of fat cell differentiation; and regulation of lipid metabolic process. Located in extracellular exosome. Implicated in artery disease (multiple); congenital stationary night blindness 1H; familial hyperlipidemia; mental depression; and type 2 diabetes mellitus.

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K07825 GNB3; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05117302_05122058.mRNA True 3553 mRNA 0.40 8 5115426 5122712

Neighbor

gene id symbol gene type direction distance location
CI01000016_05100744_05111181 P3H3 coding upstream 4037 5100744 ~ 5111389 (+)
CI01000016_05064542_05068162 NA coding upstream 46616 5062914 ~ 5068810 (+)
CI01000016_04981918_04985412 NA coding upstream 129791 4981610 ~ 4985635 (+)
CI01000016_04969263_04970446 CXCR3.2 coding upstream 144794 4968502 ~ 4970632 (+)
CI01000016_04932388_04935392 NA coding upstream 179522 4931929 ~ 4935904 (+)
CI01000016_05192890_05204267 TPI1.S, TPI1, TPI, TPI1B, TPI1A coding downstream 70070 5192782 ~ 5204759 (+)
CI01000016_05229439_05231984 NA coding downstream 106627 5229339 ~ 5233159 (+)
CI01000016_05335334_05352325 RASIP1 coding downstream 212622 5335334 ~ 5352667 (+)
CI01000016_05381573_05383796 NA coding downstream 258205 5380917 ~ 5383818 (+)
CI01000016_05388832_05396460 ZNF628 coding downstream 266120 5388832 ~ 5397080 (+)
G95731 NA non-coding upstream 24417 5060171 ~ 5091009 (+)
G95726 NA non-coding upstream 26869 5056996 ~ 5088557 (+)
G95751 NA non-coding upstream 135113 4980101 ~ 4980313 (+)
G95718 NA non-coding upstream 152840 4962250 ~ 4962586 (+)
G95785 NA non-coding downstream 1512 5124224 ~ 5127893 (+)
G95737 NA non-coding downstream 81175 5203887 ~ 5206127 (+)
G95793 NA non-coding downstream 110484 5233196 ~ 5325915 (+)
G95844 NA non-coding downstream 133803 5256515 ~ 5256900 (+)
G95845 NA non-coding downstream 133889 5256601 ~ 5258167 (+)
CI01000016_04829592_04837305 NA other upstream 278771 4829592 ~ 4837457 (+)
G95648 NA other upstream 841521 4272636 ~ 4273905 (+)
G95439 NA other upstream 1251569 3862175 ~ 3862305 (+)
G93406 NA other upstream 4187894 905400 ~ 927532 (+)
G95792 NA other downstream 97168 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 283157 5405791 ~ 5407963 (+)
G96389 NA other downstream 2037929 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2661353 7783987 ~ 7784996 (+)
G97824 NA other downstream 2891651 8014363 ~ 8015775 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009750 gnb3a coding NC_007127.7 CM002900.2 12022543 ~ 12049762 (+)
bowfin (Amia calva) AMCG00002717 gnb2,LOC108428986,LOC105023919,LOC106567879 coding PESF01000045.1 PESF01000045.1 9766 ~ 14078 (+)