CI01000016_04969263_04970446 (CXCR3.2)


Basic Information

Item Value
gene id CI01000016_04969263_04970446
gene name CXCR3.2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4968502 ~ 4970632 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04969263_04970446.mRNA
GTATTAAAAAATCTTTTGGTTTTGATATGAATTGCAACACACACACACAGACAAAAAAAAAAAAATAAATAAATAAATAAATATATATATATATATATTCAAAATTTTTCATTCAGTGTTCATTCAAGTAATCTTTTCCTTGTCTTTTTAATGACTCTAGCTTTTTTATTCTACTCTAGCAAAAACACCACACCTACCAAAATACAATAAAATATGTTAATGGCACATAATGGATAAAATATTATTTTTCATTAGTTTGTATTATGTTTCATTGCATATGCCAAACTTATGCAATGTCAATTTTCAGCACTTTCAGTTCCCTATAGTCGAACTCTACTATTCCCACTTTTGCACCATAAACTCATTACATTTTGCATAACACAATTTTTTTTTTTTCAAACATTCAAGTTTACTAACCTGTCACAACCAGCTTTCTATCTTTTAAATTGCAAAGGTGTTTTCAAGAAACTTTTTGATTATGTCTGCCCTCAGCAAATTGGGGATTTCAGTGTTTTATCTTTAATCAAACGAGTTCAGTTTTATTTCTCTCTGGATGCAGCCTTCAGTTCCTCTTTGCAGTGGTTATATGAAAATGTAGGATTCAGTTTCTGTGTTCTGACTTCTCGCTCTCTATCCTTGTTTTTTTCTCTACCGAAATTTGCTCAAAAGAAAGGAGAGACATATAGACAAGATAGCGTGAGAGACGAGTGAATCTCGTGCCCACTATTTTACTTGTATGTCTCACTTCTCTGAAGCACATCATGAAGAACAGCACAACATCCACGGACAACTACGAAGAGTACACACAATATGACTATGAATATGACGAAAATTACCATGATGATGCCAGTGCTGCCCCCTGTAGTCTGAAGGAATCATGGGAATTTCTTGGTCGCTTTGCCCCTGTAGCTTACATCCTAGTCTTTATCCTGGCACTAGTTGGTAATGTTCTAGTGCTGTGTGTGATCCGCCGCTATCGTCAGTCTCGACACAGTCCCTGCTCCTTCTCACTGACGGACACCTTCCTGCTCCATTTGGCCGTCTCTGACCTCCTACTGGCTGTCACGTTGCCATTTTTCGCTGTCGAGTGGATCAACCAGTGGGTGTTTGGCGTGTTCATGTGTAAAATAGCCGGAGCGATGTTCTCGCTGAATGTCTATTGTGGGGTGCTATTCCTGGCCTGCATCAGCTTTGACCGATACTTGGCTATCGTACATGCCATCAATATCAGCTGGAGACGCAAGACCTGCCACGCTCAGCTGGCCTGCGCCATCATCTGGGTCGTCTGCTTGGGATTGGCCATGGTGGATGTGCTCTACCGTAACGTGGTGAAAGTACAAGGAATGAATCGGTTGGTGTGCCAGACAGTGTATTCTCAAAAGAACTTCCAGCTATGGCAGGTCGGCATGCAGCTGGTTGGTTTGATTCTTGGATTCATTCTACCCCTACTGGTCATGCTGTATTGCTACCTTCGCATTTTCAAAGCACTGTGCCACGCCACGCGTAGGCAGAAACGACGCTCTCTAAGGCTCATCGTCTCATTGGTCATTGTGTTTGTGGTCAGTTGGGCGCCTTATAATGCCCTTCGGCTGACCGACAGTCTGCAGGCGCTCGGGGTCATTGTCAAAAGCTGTGCGCTGAACAAGGTGCTGGATGTGGGCATTCTGGTGACCGAAAGCCTGGGGCTGGCGCATTGCGCTTTAAATCCACTACTCTACGGCCTTGTGGGGGTGAAGTTCCGTCGTGAGCTCGCCCAGATGTGCAAGGCTGTTTTAGGACCCCGGGGGTGCCTCGGATTAGCAGGATGGGCAAGAATACCTCGTACTTCTCTGTCATGGCCTGAAAAGAGTGCAATGACATGAACAAGAGGAGAAGTGATTGTTGTTTTTATTTGGGATTGAAAAGAGTGCAATGACATGAACAAGAGGAGAAGTGATTGTTGTTTTTATTTGGGATTGGAAAGTAATCACGATTTCAGTTTGTATAGTCTGAGTGATTTTAAAACTAAAATTTTCCATGTTCTCTTTTTGAAAAGATGCCATTTTCTA

Function

symbol description
cxcr3.2 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Acts upstream of or within several processes, including chemokine-mediated signaling pathway; leukocyte migration; and macrophage activation involved in immune response. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in blood island and macrophage. Human ortholog(s) of this gene implicated in asthma. Orthologous to human CXCR3 (C-X-C motif chemokine receptor 3).

GO:

id name namespace
GO:0070098 chemokine-mediated signaling pathway biological_process

KEGG:

id description
K04188 CXCR3, GPR9, CD183; C-X-C chemokine receptor type 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04969263_04970446.mRNA True 2048 mRNA 0.42 2 4968502 4970632

Neighbor

gene id symbol gene type direction distance location
CI01000016_04932388_04935392 NA coding upstream 32598 4931929 ~ 4935904 (+)
CI01000016_04911596_04920356 NA coding upstream 47683 4910169 ~ 4920819 (+)
CI01000016_04893170_04904103 NA coding upstream 64243 4893133 ~ 4904259 (+)
CI01000016_04850826_04860560 NA coding upstream 107817 4850315 ~ 4860685 (+)
CI01000016_04829592_04837305 NA coding upstream 131045 4829592 ~ 4837457 (+)
CI01000016_04981918_04985412 NA coding downstream 10978 4981610 ~ 4985635 (+)
CI01000016_05064542_05068162 NA coding downstream 92282 5062914 ~ 5068810 (+)
CI01000016_05100744_05111181 P3H3 coding downstream 130112 5100744 ~ 5111389 (+)
CI01000016_05117302_05122058 GNB3A, GNB3 coding downstream 144794 5115426 ~ 5122712 (+)
CI01000016_05192890_05204267 TPI1.S, TPI1, TPI, TPI1B, TPI1A coding downstream 222150 5192782 ~ 5204759 (+)
G95718 NA non-coding upstream 5916 4962250 ~ 4962586 (+)
G95692 NA non-coding upstream 40710 4814181 ~ 4927792 (+)
G95703 NA non-coding upstream 115538 4852041 ~ 4852964 (+)
G95489 NA non-coding upstream 414492 4547513 ~ 4554010 (+)
G95751 NA non-coding downstream 9469 4980101 ~ 4980313 (+)
G95726 NA non-coding downstream 86364 5056996 ~ 5088557 (+)
G95731 NA non-coding downstream 89539 5060171 ~ 5091009 (+)
G95785 NA non-coding downstream 153592 5124224 ~ 5127893 (+)
G95737 NA non-coding downstream 233255 5203887 ~ 5206127 (+)
G95648 NA other upstream 694597 4272636 ~ 4273905 (+)
G95439 NA other upstream 1104645 3862175 ~ 3862305 (+)
G93406 NA other upstream 4040970 905400 ~ 927532 (+)
G95792 NA other downstream 249248 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 435237 5405791 ~ 5407963 (+)
G96389 NA other downstream 2190009 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2813433 7783987 ~ 7784996 (+)
G97824 NA other downstream 3043731 8014363 ~ 8015775 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009747 cxcr3.2 coding NC_007127.7 CM002900.2 11818126 ~ 11825303 (+)