CI01000016_05100744_05111181 (P3H3)


Basic Information

Item Value
gene id CI01000016_05100744_05111181
gene name P3H3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5100744 ~ 5111389 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05100744_05111181.mRNA
ATGGCGCTACACTCAAACACAGTCCCTGTATACGTGGCGTCCCTCTTCTTTCTCAACTATGTGTTTATAACGGCAGGCAGTGGACTTTCTTCAGAGAGTTCATCCAAACTTTTAGCCCCTTACGATGAGCTCTATTACCGCGGGGTTCGGGCGTATTTTAAGGAGGATTGGGAGCGCGCGGCGGAGTTCCTAGAGAAATCCATTTCCACACGAGACATGCTCCTGCGGACCAGACGAAAATGTCACGACGAGTGTTTAACAGCAGGAGATGACAAAGTCTCTAAACTAGACACAGCGGATGCTACTTTCTGGGACCTGGGGATACTAGACTGGATCCAGGCGCAGGCCGAGTGTGTGAAGTTCTGTATGGGTCGAAGTGTTTCTCCTGCTGCTCTGCTCCCAGTATCTTCAGACATTGAGTATGAATTTGGAACACGCAACCCTTACAACTACATGCAAGTCACCTACTACAGGTTGGATAAAATGGACAAAGCAGCTTCAGCTGCTCATACGTTCTTTGTGGCCAATCCGAGTCACCTGGAGATGAGGAACAACATTGAGAAGTACAGGAGGATGATAGGAGTGAAAGACGAATCCTTCCAGGACAGAGAGAGAGAGCAGGAGCAACACTGGGAGATGTATGATGCAGCCGTTCTGGCTGAGAGCTCGTCTGATTGGGTGAAGGTGGTGAAGAAGTGGAAGGAGTGTGTGAATGAGACGCTTAAGCAGACAGAAGAATGCAGAGCTCAGTGTGAGATGGCGCCACGGGTCCTTCCGGAGGAGCCAGACAATGCACATGGTGTTTACGAGAGAGCTGCAGACCTCTCTCTCTCCTTGCTGTCATGCAAACAGACATGCGTGACCTTAGTGTCAACACGACCTGGAAGGGTTTCTGCTCTGGAGGACTTTCTGCCCTTACAGCTCGAGCATCTACATATTGCACAATTCAAAGCTGGTGACCTGAAGGGGGCGGTAGAGACCCTGCGCTCCTTGCTGCTCTTTTACCCCACAGATTCAGACTCCCTTAATAACATGGAGCTCTACTCTCAGACTCTAGAGGGCGACACAGAGGCTCAGGAAACAGGCCCCATGCCGGAAATTGCCAAGTATGTCAGGAGAGCTTTGCAAGAGAAGAGACTGCTGTACTTTGGGATGGCAAACTTGGATTTTAAATTCAGTGACCCGCTAGCCAAAAAAGGCCTTAGTCTCACTCTCTGTCCCCATCAGGATCTGTGGACACCCGAGGACGTTGTGCCTGAATCTCTGCGAGAAACCTGGAGAGCAGAGAAAGAGCAGCTTCATGAGAAACTGAAGCAGGGCCAGAAAGTGGAAGAAGTGGATGATAGTGGATTTTATGCAGGTGGTCCTATTCCTGTGGTTGGCGTAACACTCACTATGGATGATCAGGGGCTGAACGGGACCAACCGTGTGGTGCTGGATGGAGTTTTATCCCAATCTGAATGTGATCGCGTGATGCAGCTGGCTGCCGTTGCTGCATCAGTGGGTGATGGTTACCGGGGGCGACGCTCTCCTCACACGCCACATGAGAAGTTTGAGGGCTTGACTGTTCTCAGAGCACTTAAGTTGTCTCAGGATGGGCTGGTCAAACAATCAGATGCCAAGCTGCTGCATGAGATCGGGGAGACCGTAAAAGTTCTGATGGACTCGTACTTCAGAAGTCACTCTCCTCTCTACTTTGCTTACACACACTTAGTGTGCCGCTCCGCCATCCCAGGACAGCAAGAGGGGCGGTCAGATCTTTCTCACCCAGTTCATGTGGATAACTGCATCCTGGAGCCAGAAACCAGGCAGTGCTGGAGAGAAGCTCCTGCTTTTACTCATCGAGATCTCAGTGCAGTTCTTTACCTGAATGATGATTTTGAAGGAGGTGATTTCTTCTTCACTGATCGAGACACCAAAACAGTCACCGCAAAGGTTAAACCAAGCTGTGGGCGACTTGTTGGATTTACATCAGGACCTGTCAATCCACACGGAGTTACTGCAGTAACGAAGGGTCGACGATGTGCACTGGCACTCTGGTTCACCACTGAAAAGCACCACAGAGATATGGAACGCGAGGAAGCTGAAGCCTTATGGGCAGCTGATGGACAGATTGTAGTAAAAGAGGAGAAGGTTGATACTGAGAGCGTTTTGAAATCTGCCCGCAGTGGGAGAAGCCAAGGAAAAGAGAGGAGCAAAGAGAGAGAAAGAGTGACAGGCAGACGGGATGAACTGTAAGAATGACAGATGAATGAGCAGAAAATAGACATCCATGGACATTAAATGCCATGCTGCTTATTCACCCTGTCATTTCATGAACCTGTTCCACACGGTTTTGTGTGTCTAAGTGTGAGTGTGTATTTGTGCGTGAGTGTGTGTGTGTTTATGTGTTTGTGCCCTTGTTTCAGTATGTCTTATGTTTTGATTCTGGTTAGTATTTCAAAGA

Function

symbol description
p3h3 Predicted to enable procollagen-proline 3-dioxygenase activity. Predicted to be involved in collagen metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in axial mesoderm and axis. Orthologous to human P3H3 (prolyl 3-hydroxylase 3).

GO:

id name namespace
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05100744_05111181.mRNA True 2446 mRNA 0.49 16 5100744 5111389

Neighbor

gene id symbol gene type direction distance location
CI01000016_05064542_05068162 NA coding upstream 31934 5062914 ~ 5068810 (+)
CI01000016_04981918_04985412 NA coding upstream 115109 4981610 ~ 4985635 (+)
CI01000016_04969263_04970446 CXCR3.2 coding upstream 130112 4968502 ~ 4970632 (+)
CI01000016_04932388_04935392 NA coding upstream 164840 4931929 ~ 4935904 (+)
CI01000016_04911596_04920356 NA coding upstream 179925 4910169 ~ 4920819 (+)
CI01000016_05117302_05122058 GNB3A, GNB3 coding downstream 4037 5115426 ~ 5122712 (+)
CI01000016_05192890_05204267 TPI1.S, TPI1, TPI, TPI1B, TPI1A coding downstream 81393 5192782 ~ 5204759 (+)
CI01000016_05229439_05231984 NA coding downstream 117950 5229339 ~ 5233159 (+)
CI01000016_05335334_05352325 RASIP1 coding downstream 223945 5335334 ~ 5352667 (+)
CI01000016_05381573_05383796 NA coding downstream 269528 5380917 ~ 5383818 (+)
G95731 NA non-coding upstream 9735 5060171 ~ 5091009 (+)
G95726 NA non-coding upstream 12187 5056996 ~ 5088557 (+)
G95751 NA non-coding upstream 120431 4980101 ~ 4980313 (+)
G95718 NA non-coding upstream 138158 4962250 ~ 4962586 (+)
G95785 NA non-coding downstream 12835 5124224 ~ 5127893 (+)
G95737 NA non-coding downstream 92498 5203887 ~ 5206127 (+)
G95793 NA non-coding downstream 121807 5233196 ~ 5325915 (+)
G95844 NA non-coding downstream 145126 5256515 ~ 5256900 (+)
G95845 NA non-coding downstream 145212 5256601 ~ 5258167 (+)
CI01000016_04829592_04837305 NA other upstream 264089 4829592 ~ 4837457 (+)
G95648 NA other upstream 826839 4272636 ~ 4273905 (+)
G95439 NA other upstream 1236887 3862175 ~ 3862305 (+)
G93406 NA other upstream 4173212 905400 ~ 927532 (+)
G95792 NA other downstream 108491 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 294480 5405791 ~ 5407963 (+)
G96389 NA other downstream 2049252 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2672676 7783987 ~ 7784996 (+)
G97824 NA other downstream 2902974 8014363 ~ 8015775 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009749 p3h3 coding NC_007127.7 CM002900.2 11992498 ~ 12006828 (+)