G94958


Basic Information

Item Value
gene id G94958
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2934306 ~ 2934953 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU108054
AAAAAGCTCCATAAATAGAAATTTTATTTATTGCATATTTTGCTAAGAACATTGTCCTTTTTGTGATCAGTTTTAATCTGGAACCATTTACAAAGTCGACAAGTGTATGATGCCTAGAGTTTTAAAATCTGTTCAGACTTATAAGTTGTGTAGTGCATTCCAGCCCTTTACTGAAAAAACGCAAGGTATGGCTCATTAAAGCTACAAGCTGCTGAATGACTACTGACGCTGAGCCCATTGATTAGCTCATATCCTCTATGATGAAGTGTGTGATTAAGCCCTTCATGTTCTTGCTTGATCATAAGTGGATCACAGCCACACAAGAGTCAGGGAAAACGAGAACATTTCCCTGTAGTGAACACTAATGTGATCCTCAACCTGGAGGCAGGGGTCAGAGGATGATGTCATGGCTGTTACCAAGGCAACATCAACAGAAACATAAGGTAGCACGGCTGGAATTGTTAGATCAGCTTCAGTGCATTGCATCACTTCTTCCAAAACCACCCACCTTCCAAACACATATGCTAGACACTCACACTTTGTATTGCCAGGAAGGGTTGAGGCACATCTCTGAGGAATGTGAATAATGACAGTGAAATTTCTCACTGGGAAATTATGTTATTGCTGCTTGTGTACGAGGATGTTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU108054 True 648 lncRNA 0.40 1 2934306 2934953

Neighbor

gene id symbol gene type direction distance location
CI01000016_02918064_02918435 NA coding upstream 15766 2917764 ~ 2918540 (+)
CI01000016_02876373_02882129 NA coding upstream 52158 2876187 ~ 2882148 (+)
CI01000016_02793868_02796984 EVA1BA coding upstream 136973 2793868 ~ 2797333 (+)
CI01000016_02741163_02753993 STK40 coding upstream 180253 2741163 ~ 2754053 (+)
CI01000016_02722831_02730864 OSCP1B, OSCP1 coding upstream 202728 2722831 ~ 2731578 (+)
CI01000016_02965137_02979305 SCMH1 coding downstream 30184 2965137 ~ 2979509 (+)
CI01000016_03050072_03055313 CTPS1A, CTPS1, CTPS1B coding downstream 113589 3048542 ~ 3055370 (+)
CI01000016_03056468_03058753 TAF12 coding downstream 121515 3056468 ~ 3059289 (+)
CI01000016_03158359_03165518 NA coding downstream 223406 3158359 ~ 3165822 (+)
CI01000016_03190518_03261836 NA coding downstream 255213 3190166 ~ 3262243 (+)
G94956 NA non-coding upstream 2673 2931418 ~ 2931633 (+)
G94955 NA non-coding upstream 2983 2931100 ~ 2931323 (+)
G94928 NA non-coding upstream 55392 2878682 ~ 2878914 (+)
G94917 NA non-coding upstream 85763 2848318 ~ 2848543 (+)
G94915 NA non-coding upstream 88765 2845269 ~ 2845541 (+)
G94977 NA non-coding downstream 52385 2987338 ~ 2987550 (+)
G94978 NA non-coding downstream 53644 2988597 ~ 2988808 (+)
G94988 NA non-coding downstream 89206 3024159 ~ 3024430 (+)
G94991 NA non-coding downstream 92927 3027880 ~ 3028216 (+)
G95003 NA non-coding downstream 108058 3043011 ~ 3043218 (+)
G93406 NA other upstream 2006774 905400 ~ 927532 (+)
G95439 NA other downstream 927222 3862175 ~ 3862305 (+)
G95648 NA other downstream 1337683 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 1899605 4829592 ~ 4837457 (+)
G95792 NA other downstream 2284927 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 2470916 5405791 ~ 5407963 (+)

Expression


Co-expression Network