CI01000016_03056468_03058753 (TAF12)


Basic Information

Item Value
gene id CI01000016_03056468_03058753
gene name TAF12
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3056468 ~ 3059289 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_03056468_03058753.mRNA
ATGACCCAGTACCCGCCACAGACTAGTCGCTCCAACTTCTACGCTGTTGTGAAAGCAGAAGCCTCTTCAACACCACCTCTCTCCACCAACATGGCCAACAGCACCGTCGTCCCCAGCAAAGTTCCAGGCACCCCTGGACCTGCAGGGAGACTGAGTCCTGAAGGCACTCAGGTGCTCAGCAAGAAGAAGCTGCAGGACCTTGTGCGAGAAATTGATCCTAATGAGCAACTCGATGAGGATGTAGAGGAGATGCTCTTGCAGATTGCTGATGATTTCATTGAGAGCGTGGTGACCGCTGCATGCCAACTTGCACGACACAGGAAGTCAAATACTCTCGAAGTGAAAGATGTCCAGCTACACCTCGAACGACAGTGGAACATGTGGATTCCTGGCTATGGCTCAGATGAGATCCGACCATATAAGAAGGCATGCACCACAGAAGCCCACAAACAGAGAATGGCATTGATCCGCAAAACAACCAAAAAGTAACCAGATCGGAAGTACCAACAAACATTTTTTTTTCCCTGGAAGTTTTGGAAGTGGGGATGGTTTGAACCTATACATGTTATGTTAATCAAAGAGGAAGAATGCATTGTACTATTTGCAGTACGCTTCTGTTGACATTTCTCATTCGAAAGGTGTGCAGGAATTAATGTAATTTGTCTGTACAGTTCACTTTGTGTTAAAACCACCATGTGAACATTTTGTTTGAGCACCTTGGTGCTATACTGGGGCTTTATTATATGATAGAATCTCACGGAGCTCTGTCAAAAACAATTTTTTTTTATTGTTTTACCCACAAACCACATTTTCATTCATATTACATGTATAGTTGACCCATCATGCAGTCACACAACTTCTGCTCAGCTGGCATTAGTAGCTATGCACAGTTACAATCACCATGTTGTCTGATTTGTTTATAATGTTCGGTGTTATAGGACTCATCACTTAAGTAATATTTAGTACTATAGAGAAATCCTTAGTGTGTGACTTTCTAAAGGTAAACAGTCATTTTTACCAGAGAA

Function

symbol description
taf12 Predicted to enable DNA binding activity and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF12 (TATA-box binding protein associated factor 12).

GO:

id name namespace
GO:0005669 transcription factor TFIID complex cellular_component

KEGG:

id description
K03126 TAF12; transcription initiation factor TFIID subunit 12

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_03056468_03058753.mRNA True 1025 mRNA 0.43 5 3056468 3059289

Neighbor

gene id symbol gene type direction distance location
CI01000016_03050072_03055313 CTPS1A, CTPS1, CTPS1B coding upstream 1098 3048542 ~ 3055370 (+)
CI01000016_02965137_02979305 SCMH1 coding upstream 76959 2965137 ~ 2979509 (+)
CI01000016_02918064_02918435 NA coding upstream 137928 2917764 ~ 2918540 (+)
CI01000016_02876373_02882129 NA coding upstream 174320 2876187 ~ 2882148 (+)
CI01000016_02793868_02796984 EVA1BA coding upstream 259135 2793868 ~ 2797333 (+)
CI01000016_03158359_03165518 NA coding downstream 99070 3158359 ~ 3165822 (+)
CI01000016_03190518_03261836 NA coding downstream 130877 3190166 ~ 3262243 (+)
CI01000016_03267301_03268376 NA coding downstream 205856 3265145 ~ 3268391 (+)
CI01000016_03503738_03504907 NA coding downstream 444383 3503672 ~ 3504907 (+)
CI01000016_03546616_03553250 TUFT1A coding downstream 487327 3546616 ~ 3553749 (+)
G95003 NA non-coding upstream 13250 3043011 ~ 3043218 (+)
G94991 NA non-coding upstream 28252 3027880 ~ 3028216 (+)
G94988 NA non-coding upstream 32038 3024159 ~ 3024430 (+)
G94978 NA non-coding upstream 67660 2988597 ~ 2988808 (+)
G94977 NA non-coding upstream 68918 2987338 ~ 2987550 (+)
G94972 NA non-coding downstream 3265 3062554 ~ 3070931 (+)
G95007 NA non-coding downstream 33249 3092538 ~ 3092777 (+)
G95033 NA non-coding downstream 209693 3268982 ~ 3295166 (+)
G95339 NA non-coding downstream 294122 3353411 ~ 3353772 (+)
G95341 NA non-coding downstream 298329 3357618 ~ 3357821 (+)
G93406 NA other upstream 2128936 905400 ~ 927532 (+)
G95439 NA other downstream 802886 3862175 ~ 3862305 (+)
G95648 NA other downstream 1213347 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 1775269 4829592 ~ 4837457 (+)
G95792 NA other downstream 2160591 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 2346580 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010818 taf12,LOC107705731,LOC107588503,LOC107566933,LOC107755488,LOC107700725 coding CM030133.1 CM030133.1 1214405 ~ 1219326 (-)