CI01000016_03050072_03055313 (CTPS1A, CTPS1, CTPS1B)


Basic Information

Item Value
gene id CI01000016_03050072_03055313
gene name CTPS1A, CTPS1, CTPS1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3048542 ~ 3055370 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_03050072_03055313.mRNA
GTATAAATGTGCATTTGCCTGTTTTCATACATAGCCTATGACTCAAAAATGCTAATTATCTTACGGGTTTTACAATTACGAATACTAAGTAGAAATCTACTCAGATGGTTCTCCTGAGTACCCAACCACAGTGATTACAGGCATGAGGCTATATTGCAGTTTAGTACAGGCCAATGTACATCTTACCGTAAATAGCAACTGTAAGTTGCATGCAGAGATGATGGGCAAGATTGAGTCTGGAGAAATAACCACCATAATGTACATCAGCTGCTTATAATTTTAACATAGAAAGCTGAAACTTGTTAGAGATTGCCAGATGATACTCATTTTAATACTCATTTTACGTATTATAGATGATATCAATGGAAATTTTAAATAAACTAGCTATAAACCAGTAGAGGTGGAATGTGAGCCCACATTTAGACAACATGTTTCATTCAGGGAATGTAACAGTAAATTAAGTAAGTTTAAAAACATTTAAAAATAAATAGACTAGTTCGATGTAATTGATATAGAAAGTATGCGATAAAATATCGCAATTACATTGTTAACTATCATAACGTGTTAATTCTACGTTATAACCCCCCAATCTAGCAATGTAGCGGAGAGTGGCAAAGCTAGAGTTAAAAAAACTCAGTATCGGATCTCGCACCACGTGTTGTTTTGGCGCTTTACCGCATTTCGCTGACACCCAAACAAACGTGTCGTGTAGATGGTTTGTTTATATTGAATCGGTTGACGTTTTTAATCTACGGTTTTTACATATTTGAACGGCACGAGTTCAGGTACAGTTAAACGTTCATTTTTTTCCATTTCTGGTTTCATTGCACCTCGCGAGTCACTTAAACCAACATGGAAGTTTACTGCAGTGTTATATAATATATTAGGGACCTCTAATCAATGGGTTTCAATCATGAGCCAACCAAAATACACTCGGAAAGGATATGCTAGCATACATATGCTATAGACTCATTAGTGAATGTGGCTTTGTCGTATTTTGCTTTTGTTTACAAGGTCATCTTGGTTTACATTTTGTCCTCTGAACATTATTATGTGCTGGGATGTTGCAGAATTTGGCATGGTCATTATAAATGTATGTAAATATATTTATCTAAATATTTGAATGTTAAATATATATATGTATAAATATTAATTGTTATTTGGCCTGTCTTCCCCAACAATATAATTAATGATTTACTTACAGTGTCATATATATAGTCAAGACAGTTACAACAACTAGACATTAAGTCCCACAAAAATATTAAAATGTAACAAAAAATGTTAAAAATATTGAAATTTAGTTCATAAATTGACTTGTTCATTATAGAAGAGGTGTATTCAATGCATTTTTATGAACTGCATTTTTATGTGTTTTTGATTAACTTAGTTCCAGAAAAAAAAAACAATTATTGTGAAGTTATTGATGCACTTAGATTTTCTATTCTGTTTGTGGCTCATTGTTACATTGTATTAAATCATTGTTGAAATAAACATCACTGTCTTTCGTACACTGACAGACAGTGTTGAATAATGAAGTATATACTGGTGACCGGTGGTGTGATATCTGGCATTGGTAAAGGGATCATAGCCAGCAGTGTGGGCACTATCCTCAAATCATGTGGCCTGCATGTCACTGCTATCAAAATCGACCCCTACATCAACATCGATGCAGGCACTTTCTCTCCCTATGAACATGGTGAGGTGTTTGTGCTAGATGATGGCGGCGAGGTTGACTTGGATTTAGGGAATTACGAACGTTTTCTGGACATCCGGTTAACCAAGGATAACAATCTGACGACGGGGAAGATCTATCAGTCTGTTATAACCAAGGAGAGGAGAGGGGATTACTTAGGCAAAACTGTACAAGTGGTACCACACATTACTGATGCTATACAGGAATGGGTCATGCGGCAGGCTAAGGTCTCGGTGGACGATGACGGAATTGAGCCAGAAGTCTGTGTTATTGAGCCCAATTCAACAGGAGAACAGAAGACCAAACCCACACAGAACAGTGTTCGAGAGCTTCGTGGACTTGGCCTGTCACCTGATCTGATTGTTTGTCGTTGCTCAACTCCATTGGACACTGCTGTCAAAGAGAAAATCTCCATGTTTTGCCACGTAGAACCTGAACAGGTGATCTGCGTGCATGACGTGTCCTCAATCTACAGAGTACCTTTACTCCTGGAGGATCAGGGCATTGTTGACTACTTCTGCCACAGACTGGACTTGTCCATTGAGATGAGACCTCGAAAAATGCTCACAAAGTGGAAGGAGATATCAGACAGGTCTGACCGACTCCTGGAGCAAACCTCCATTGCTTTAGTAGGCAAATACACCAAACTGTCAGATTCATATGCGTCTGTTATTAAAGCACTGGAGCACTCTGCCCTCGCCATCAACTATAAGCTAGAGGTCAAGTACATAGATTCAGCAGATCTGGAGCCAGCAGCGTTGCAAGATGAGCCGGTTAAATACCATGAGGCCTGGCAGAAGCTCTGCAGTGCTGATGGGGTTCTTGTTCCTGGTGGCTTTGGTGTGCGAGGCACTGAGGGAAAAATCCAAGCCATTAACTGGGCGAGGAAACAGAAAAAGCCATTTTTAGGTGTTTGTTTGGGCATGCAGCTGGCAGTGTGTGAATTTGCTCGTAATGTACTCGGCTGGGAAGATGCCAATTCTACAGAATTTGATCCTGAAACCAAACATCCAGTGGTGATTGAAATGCCTGAACACAATCCTGGACAGATGGGAGGAACTATGCGGTTAGGAAAAAGGCGCACCTTATTCAAAAACACCTCCAGCGTTCTTCGAAAGCTGTACGGCGATGCTGAATATGTGGACGAAAGGCATCGACATCGCTTTGAGGTGAATCCAGAACTGAAGCACCACTTTGAGGATAGAGGCTTTCGATTTGTGGGTCAGGATCTGGAGGGGGAGCGGATGGAGATCATTGAACTTGAAGCAGATCACACTTATTTTGTCGGAGTGCAGTACCACCCAGAATTCACTTCTCGCCCCATTAAACCCTCGCCTCCTTATTTTGGCCTTCTACTGGCAGCATCTGGGAAACTACAGAACTACCTACAGAAAGGATGCCGGCTCTCACCGCGAGACACATACAGTGACCGAAGTGGCAGTAGTTCACCAGACTCAGAGATCTCTGAAATCAAATTTCCTTCACTCTCTTAAAGGAGGAATATCCACATAATCATAAAACATATTTATGACATGAAACGATGAACTTGA

Function

symbol description
ctps1a Predicted to enable CTP synthase activity and identical protein binding activity. Acts upstream of or within notochord development. Predicted to be active in cytoophidium and cytoplasm. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; nervous system; and pectoral fin bud. Human ortholog(s) of this gene implicated in immunodeficiency 24. Orthologous to human CTPS1 (CTP synthase 1).
ctps1b Predicted to enable CTP synthase activity and identical protein binding activity. Acts upstream of or within notochord development. Predicted to be active in cytoophidium and cytoplasm. Is expressed in blood cell and vascular endothelium. Human ortholog(s) of this gene implicated in immunodeficiency 24. Orthologous to several human genes including CTPS1 (CTP synthase 1).
ctps1 Enables CTP synthase activity and identical protein binding activity. Involved in B cell proliferation; CTP biosynthetic process; and T cell proliferation. Located in cytoophidium. Implicated in immunodeficiency 24. Biomarker of biliary tract benign neoplasm.

GO:

id name namespace
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process

KEGG:

id description
K01937 pyrG, CTPS; CTP synthase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_03050072_03055313.mRNA True 3243 mRNA 0.40 15 3048542 3055370

Neighbor

gene id symbol gene type direction distance location
CI01000016_02965137_02979305 SCMH1 coding upstream 69033 2965137 ~ 2979509 (+)
CI01000016_02918064_02918435 NA coding upstream 130002 2917764 ~ 2918540 (+)
CI01000016_02876373_02882129 NA coding upstream 166394 2876187 ~ 2882148 (+)
CI01000016_02793868_02796984 EVA1BA coding upstream 251209 2793868 ~ 2797333 (+)
CI01000016_02741163_02753993 STK40 coding upstream 294489 2741163 ~ 2754053 (+)
CI01000016_03056468_03058753 TAF12 coding downstream 1098 3056468 ~ 3059289 (+)
CI01000016_03158359_03165518 NA coding downstream 102989 3158359 ~ 3165822 (+)
CI01000016_03190518_03261836 NA coding downstream 134796 3190166 ~ 3262243 (+)
CI01000016_03267301_03268376 NA coding downstream 209775 3265145 ~ 3268391 (+)
CI01000016_03503738_03504907 NA coding downstream 448302 3503672 ~ 3504907 (+)
G95003 NA non-coding upstream 5324 3043011 ~ 3043218 (+)
G94991 NA non-coding upstream 20326 3027880 ~ 3028216 (+)
G94988 NA non-coding upstream 24112 3024159 ~ 3024430 (+)
G94978 NA non-coding upstream 59734 2988597 ~ 2988808 (+)
G94977 NA non-coding upstream 60992 2987338 ~ 2987550 (+)
G94972 NA non-coding downstream 7184 3062554 ~ 3070931 (+)
G95007 NA non-coding downstream 37168 3092538 ~ 3092777 (+)
G95033 NA non-coding downstream 213612 3268982 ~ 3295166 (+)
G95339 NA non-coding downstream 298041 3353411 ~ 3353772 (+)
G95341 NA non-coding downstream 302248 3357618 ~ 3357821 (+)
G93406 NA other upstream 2121010 905400 ~ 927532 (+)
G95439 NA other downstream 806805 3862175 ~ 3862305 (+)
G95648 NA other downstream 1217266 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 1779188 4829592 ~ 4837457 (+)
G95792 NA other downstream 2164510 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 2350499 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location